Browse Element(s) Details


Os.28983.1.S1_at

Description gb:AK110810.1
DB_XREF= gi:32996019
TID=Os.28983.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cell death associated protein (P0428D12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F04, full insert sequence.
FL= gb:AK110810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0686011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28983.1.S1_at--832--2831Chr07:3349835..3349859 (25 bp)
AAGTAGGGTAGTGCATCGAGATTCG
LOC_Os07g06860
Os.28983.1.S1_at--402--6051Chr07:3349818..3349842 (25 bp)
GAGATTCGTGCAGTCCATGTTTTTT
LOC_Os07g06860
Os.28983.1.S1_at--160--9691Chr07:3349791..3349815 (25 bp)
TCACTCTCCTTTTGGTCGAGGGCGA
LOC_Os07g06860
Os.28983.1.S1_at--4--1391Chr07:3349754..3349778 (25 bp)
AGACGGGTGTTTGTCACGTGTCAAT
LOC_Os07g06860
Os.28983.1.S1_at--920--10811Chr07:3349711..3349735 (25 bp)
TTGTCATGAGACATCAGCGGAGTAA
LOC_Os07g06860
Os.28983.1.S1_at--977--1771Chr07:3349681..3349705 (25 bp)
ACCGGATGTCCAAGTGTGATTTGCA
LOC_Os07g06860
Os.28983.1.S1_at--494--7411Chr07:3349666..3349690 (25 bp)
GTGATTTGCATGCAGTATCTTTGCT
LOC_Os07g06860
Os.28983.1.S1_at--185--10171Chr07:3349651..3349675 (25 bp)
TATCTTTGCTTTTAGCCAGTCCTGT
LOC_Os07g06860
Os.28983.1.S1_at--953--4411Chr07:3349637..3349661 (25 bp)
GCCAGTCCTGTAAAATATCGGTGAT
LOC_Os07g06860
Os.28983.1.S1_at--1046--491Chr07:3349621..3349645 (25 bp)
ATCGGTGATTTATATCTTTGCCAAA
LOC_Os07g06860
Os.28983.1.S1_at--1013--7351Chr07:3349477..3349501 (25 bp)
GTGAACTCTATTGATGTTACCATCT
LOC_Os07g06860
Target Sequence 
AAGTAGGGTAGTGCATCGAGATTCGTGCAGTCCATGTTTTTTTTTTCACTCTCCTTTTGGTCGAGGGCGACATGTGCAGG
AGAGACGGGTGTTTGTCACGTGTCAATGATGTGATGTGATGTGTGTTGTCATGAGACATCAGCGGAGTAAAATGAACCGG
ATGTCCAAGTGTGATTTGCATGCAGTATCTTTGCTTTTAGCCAGTCCTGTAAAATATCGGTGATTTATATCTTTGCCAAA
AAAANTTTTGGGTAAATTTGGATGTTTGGGTTTTTAAGTACAGTATACTGTACGTAGAATGTAAAATACTAGGGTACCAG
ATTGTAAGGGTATTATGTAAGGCAGTAGAACCAAAGATGTTGTGAACTCTATTGATGTTACCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis