Browse Element(s) Details


OsAffx.18607.1.S1_x_at

Description tigr:9638.m03851
TID=OsAffx.18607.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g068203/11RIO1 family protein, expressed
LOC_Os04g590501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18607.1.S1_x_at--637--1074Chr11:24633047..24633143 (25 bp)
AGGGCGGACCGCAGAAGCAGGAGCA
NONE
OsAffx.18607.1.S1_x_at--469--2673Chr11:24633157..24633181 (25 bp)
AAGCCGCGCAGGACAGGAGCAGCAC
NONE
OsAffx.18607.1.S1_x_at--868--953Chr11:24633166..24633190 (25 bp)
AGGACAGGAGCAGCACAACAGTGAC
NONE
OsAffx.18607.1.S1_x_at--513--3271NONE
CAACAGTGACAACACAAGCGGCGGC
NONE
OsAffx.18607.1.S1_x_at--1110--6092Chr10:22344582..22344606 (25 bp)
GAGTCGGCTACGTACTGGGCGAACA
NONE
OsAffx.18607.1.S1_x_at--277--3932Chr10:22344586..22344610 (25 bp)
CGGCTACGTACTGGGCGAACAGCGT
NONE
OsAffx.18607.1.S1_x_at--867--1891Chr10:22344591..22344615 (25 bp)
ACGTACTGGGCGAACAGCGTGACCA
NONE
OsAffx.18607.1.S1_x_at--182--3391Chr10:22344605..22344629 (25 bp)
CAGCGTGACCACGGGAGTAGTAGTA
NONE
OsAffx.18607.1.S1_x_at--10--10052Chr10:22344622..22344646 (25 bp)
TAGTAGTAGGAGTGGGCGCCGCTTT
NONE
OsAffx.18607.1.S1_x_at--762--6112Chr10:22344631..22344655 (25 bp)
GAGTGGGCGCCGCTTTTCGCCTCCT
NONE
OsAffx.18607.1.S1_x_at--102--10272Chr10:22344645..22344669 (25 bp)
TTTCGCCTCCTGACCCGGAGTTGGG
NONE
Target Sequence 
AGGGCGGACCGCAGAAGCAGGAGCAGGACAGCAACAGCAAGCCGCGCAGGACAGGAGCAGCACAACAGTGACAACACAAG
CGGCGGCGGCGGATTGCAATGTGGAGGAGGAGTCGGCTACGTACTGGGCGAACAGCGTGACCACGGGAGTAGTAGTAGGA
GTGGGCGCCGCTTTTCGCCTCCTGACCCGGAGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18607.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis