Browse Element(s) Details


OsAffx.28312.2.S1_at

Description tigr:9635.m00616
TID=OsAffx.28312.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=VQ motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0676011/11VQ motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28312.2.S1_at--57--5411Chr07:3300062..3300086 (25 bp)
GAAGCTCACCGGCAATCGCAAGCTG
LOC_Os07g06760
OsAffx.28312.2.S1_at--580--1771Chr07:3300069..3300093 (25 bp)
ACCGGCAATCGCAAGCTGTCGACGG
LOC_Os07g06760
OsAffx.28312.2.S1_at--33--4571Chr07:3300111..3300135 (25 bp)
GCGCCGGTGGATTCAACCGTGAGAT
LOC_Os07g06760
OsAffx.28312.2.S1_at--161--10511Chr07:3300122..3300146 (25 bp)
TTCAACCGTGAGATCTGCAGATGAT
LOC_Os07g06760
OsAffx.28312.2.S1_at--1104--1291Chr07:3300140..3300164 (25 bp)
AGATGATCAGATGACCGCCGGAGGC
LOC_Os07g06760
OsAffx.28312.2.S1_at--540--911Chr07:3300161..3300185 (25 bp)
AGGCGGAGCTGAGATCACTGACACC
LOC_Os07g06760
OsAffx.28312.2.S1_at--122--1711Chr07:3300208..3300232 (25 bp)
ACCAACTGGCGCTCGCGTTTGGGCA
LOC_Os07g06760
OsAffx.28312.2.S1_at--978--8951Chr07:3300272..3300296 (25 bp)
TGACAATTCGGCGAATCTTCCGTCG
LOC_Os07g06760
OsAffx.28312.2.S1_at--30--4091Chr07:3300283..3300307 (25 bp)
CGAATCTTCCGTCGCCGGGTAGCTT
LOC_Os07g06760
OsAffx.28312.2.S1_at--413--7231Chr07:3300293..3300317 (25 bp)
GTCGCCGGGTAGCTTCTTCTTGTCA
LOC_Os07g06760
OsAffx.28312.2.S1_at--968--4891Chr07:3300304..3300328 (25 bp)
GCTTCTTCTTGTCACCGACCACGAT
LOC_Os07g06760
Target Sequence 
GAAGCTCACCGGCAATCGCAAGCTGTCGACGGCGACGGCGGCGGCGGCGGCGCCGGTGGATTCAACCGTGAGATCTGCAG
ATGATCAGATGACCGCCGGAGGCGGAGCTGAGATCACTGACACCGCCGCGGCGACGGTCGCCGACGACCAACTGGCGCTC
GCGTTTGGGCAGCAGCAGCATTGGCCTGCACCACCACCGGAGATTGATGATGACAATTCGGCGAATCTTCCGTCGCCGGG
TAGCTTCTTCTTGTCACCGACCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28312.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis