Browse Element(s) Details


Os.12665.1.S1_at

Description gb:AK068414.1
DB_XREF= gi:32978432
TID=Os.12665.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium-dependent protein kinase (OJ1714_H10.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153A17, full insert sequence.
FL= gb:AK068414.1 gb:AK059003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0674011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12665.1.S1_at--11--5191Chr07:3288304..3288328 (25 bp)
GCAAGGCCAGCTAAGTTTTGGTCTA
LOC_Os07g06740
Os.12665.1.S1_at--352--9771Chr07:3287252..3287272 (21 bp)
TAATGGAATAACTACCCCTGAATGT
LOC_Os07g06740
Os.12665.1.S1_at--712--6771Chr07:3287155..3287179 (25 bp)
GTTACTCCTTTATCAACACTCTGTG
LOC_Os07g06740
Os.12665.1.S1_at--1031--9691Chr07:3287119..3287143 (25 bp)
TAACTTTTTGGGTTCCATCAGCCGG
LOC_Os07g06740
Os.12665.1.S1_at--787--3311Chr07:3287080..3287104 (25 bp)
CACGTACTTGGGTTTCTTCAAAGAG
LOC_Os07g06740
Os.12665.1.S1_at--797--2331Chr07:3287061..3287085 (25 bp)
AAAGAGTTCAACATCCGTGGACCCT
LOC_Os07g06740
Os.12665.1.S1_at--600--8511Chr07:3287044..3287068 (25 bp)
TGGACCCTCCAACCGTATAGGTGTT
LOC_Os07g06740
Os.12665.1.S1_at--859--6831Chr07:3286969..3286993 (25 bp)
GTTTCATACTTTCATGTCCTCCTTT
LOC_Os07g06740
Os.12665.1.S1_at--508--2611Chr07:3286933..3286957 (25 bp)
AACCCTTGTAGGATGCTCTGCTGAG
LOC_Os07g06740
Os.12665.1.S1_at--131--4891Chr07:3286900..3286924 (25 bp)
GCTTTGACACGCTTGGAACTTCGGA
LOC_Os07g06740
Os.12665.1.S1_at--573--6051Chr07:3286870..3286894 (25 bp)
GAGTTGGACGAGATTCCTTTGCATT
LOC_Os07g06740
Target Sequence 
GCAAGGCCAGCTAAGTTTTGGTCTAAGGGAAGCATTGAAGCTTGGTTAATGGAATAACTACCCCTGAATGTAGAATGGAG
TGCTATTTAGTAAAGGACGAAGACTGAATTCAAGAAAGCAGAAGATCAAAGACAAACGTTGGTGTTACTCCTTTATCAAC
ACTCTGTGAAGATACAAACTAACTTTTTGGGTTCCATCAGCCGGACACACAAGAAAGCCACGTACTTGGGTTTCTTCAAA
GAGTTCAACATCCGTGGACCCTCCAACCGTATAGGTGTTTTTTTTTCCTTTTTTAAATAGGCACAACTCACAAGAATAGC
GTGTGTGTTGTTTCATACTTTCATGTCCTCCTTTTCCGTTCTGGAAACCCTTGTAGGATGCTCTGCTGAGACGGTGAAGC
TTTGACACGCTTGGAACTTCGGATTGGAGAGTTGGACGAGATTCCTTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis