Browse Element(s) Details


OsAffx.28310.2.S1_x_at

Description tigr:9635.m00613
TID=OsAffx.28310.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0673010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28310.2.S1_x_at--1118--1731Chr07:3284329..3284353 (25 bp)
ACCTCATTTTCTGAACCGGCTGAAG
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--876--8551Chr07:3284364..3284388 (25 bp)
TGGATTGTTGCCCTGTACTTGAGAA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--1077--8211Chr07:3284410..3284434 (25 bp)
GGCAACACTTGATTTCACTGGTTCA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--1134--171Chr07:3284450..3284474 (25 bp)
ATTTTTGCTACAACTTCCAGCCTGA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--1145--191Chr07:3284544..3284568 (25 bp)
ATTTGCCGGTTGTTCGAATGCTCGA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--535--271NONE
ATATGTGGATAGACGCTCCTCACAA
NONE
OsAffx.28310.2.S1_x_at--666--9791Chr07:3285456..3285480 (25 bp)
TAAGAAGCCTTCCATTACACCATCA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--658--1611Chr07:3285537..3285561 (25 bp)
AGCTGGCACTTCATATCCTTTGCAG
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--888--10271Chr07:3285555..3285579 (25 bp)
TTTGCAGCTCAACCGTGCTCAAGAA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--82--3111Chr07:3285604..3285628 (25 bp)
AATAGTGCCTCACGATGCTTATCGA
LOC_Os07g06730
OsAffx.28310.2.S1_x_at--133--5811Chr07:3285668..3285692 (25 bp)
GACGCCGCTATGGAGTTTGTTTGCA
LOC_Os07g06730
Target Sequence 
ACCTCATTTTCTGAACCGGCTGAAGCATCTGCAAGTGGATTGTTGCCCTGTACTTGAGAAGATAGAGATGAACTGTGATC
TGGCAACACTTGATTTCACTGGTTCATCAATGACACCTTTGATTTTTGCTACAACTTCCAGCCTGACAAATGATTCATCA
GTAATTTGCCGGTTGTTCGAATGCTCGAATTTCATGTTGTTGAATATAAGGAAGACTGATATCCTTGACTATGCATATCT
TTTAGAAATTGCTCCTTTTATGGAAAAACTGGAACTACATATGTGGATAGACGCTCCTCACAAACCATACAGTGAAGAGG
ATGGTGATCTAAGAAGCCTTCCATTACACCATCACAATAATCTCAAACAGGTTCAGATCACTGGAATTTTCGGTCAGAAA
GATCAGGTAGAGCTGGCACTTCATATCCTTTGCAGCTCAACCGTGCTCAAGAACATGGTGATAAATCCAGAAATTGCAAT
AGTGCCTCACGATGCTTATCGACCGCCAAAAAGAGGGGCACACAATTTTGTGGATGGTCGTGACGCCGCTATGGAGTTTG
TTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28310.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis