Browse Element(s) Details


Os.27550.1.S1_at

Description gb:AK065047.1
DB_XREF= gi:32975065
TID=Os.27550.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.26 (OJ1714_H10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full insert sequence.
FL= gb:AK065047.1 gb:AK098844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0668010/11beta-Ig-H3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007155biological_processcell adhesion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27550.1.S1_at--1102--1131NONE
AGTCCAAGCTCCGACGAGGGAAGTT
NONE
Os.27550.1.S1_at--1148--8251Chr07:3259946..3259970 (25 bp)
GGCATGCCAAGTGATGGGCTTCCTA
LOC_Os07g06680
Os.27550.1.S1_at--1096--2851Chr07:3259954..3259978 (25 bp)
AAGTGATGGGCTTCCTAGGCCGAAG
LOC_Os07g06680
Os.27550.1.S1_at--910--3691Chr07:3259968..3259992 (25 bp)
CTAGGCCGAAGATCGCGATTCGCGA
LOC_Os07g06680
Os.27550.1.S1_at--384--6571Chr07:3259984..3260008 (25 bp)
GATTCGCGAGCTGCCAATAGACTAC
LOC_Os07g06680
Os.27550.1.S1_at--23--751Chr07:3260031..3260055 (25 bp)
ATGTATATCTGCCACTGCTTTTTGC
LOC_Os07g06680
Os.27550.1.S1_at--718--3671Chr07:3260048..3260072 (25 bp)
CTTTTTGCTCAACTCATGACGCTGA
LOC_Os07g06680
Os.27550.1.S1_at--690--6011Chr07:3260197..3260221 (25 bp)
GAGAGAGACGGATGGCAGACATTCT
LOC_Os07g06680
Os.27550.1.S1_at--244--5051Chr07:3260211..3260235 (25 bp)
GCAGACATTCTGGTTGGTTGTTGGA
LOC_Os07g06680
Os.27550.1.S1_at--942--5571Chr07:3260256..3260280 (25 bp)
GAAATTTGTTTATACTGGTCAGTGA
LOC_Os07g06680
Os.27550.1.S1_at--287--6291Chr07:3260353..3260377 (25 bp)
GATGTTCAGCGCTTTTTGATAATGA
LOC_Os07g06680
Target Sequence 
AGTCCAAGCTCCGACGAGGGAAGTTGTTGGAAGGGGCATGCCAAGTGATGGGCTTCCTAGGCCGAAGATCGCGATTCGCG
AGCTGCCAATAGACTACGACAATGGCTTGATGGACAAATATGTATATCTGCCACTGCTTTTTGCTCAACTCATGACGCTG
AAACATGAACCGAAATGAAGGCTACAGATGATGATTGGTTGGATGGATGAATGGACGAACAAATTGATGATGGTTTTACA
TAAGCTTAATTAAGAGGAAGAAATAAGGTGTCATGAGAACGAGTTGAGAGAGACGGATGGCAGACATTCTGGTTGGTTGT
TGGAGGTGGAAAAAAAAAAAAGGATGGAAATTTGTTTATACTGGTCAGTGAAGATCAAACACCGATGTATAGCAATTAAA
CTTTTCTATTTTTTTATTTGTTTTATTTTATTTTGTTGATGATGATGTTCAGCGCTTTTTGATAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis