Browse Element(s) Details


OsAffx.16407.1.S1_x_at

Description tigr:9635.m00611
TID=OsAffx.16407.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0671011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0048366biological_processleaf development
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16407.1.S1_x_at--495--7611Chr07:3270070..3270094 (25 bp)
GGGAATATGTCTCCTGATGAATTAC
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--412--271Chr07:3270021..3270045 (25 bp)
ATATGGGTGGACCTAGTGCTTCCCC
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--137--3231Chr07:3269952..3269976 (25 bp)
CAAGTAGTACTTCCCAGAGATCAGT
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--708--7511Chr07:3269929..3269953 (25 bp)
GTGGATAACAGCCAACCTTCATCTT
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--225--811Chr07:3269857..3269881 (25 bp)
ATGGGTGAATCATCATCCCCTGGTG
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--387--8611Chr07:3269837..3269861 (25 bp)
TGGTGCACCTTCTACAGCTGATATG
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--404--3011Chr07:3269797..3269821 (25 bp)
AATGCTATGAAAGATCCTGCGATGC
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--1104--8011Chr07:3269589..3269613 (25 bp)
GGAGGATGCTGCCAAAGCTCAAGAA
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--901--2651Chr07:3269566..3269590 (25 bp)
AAGCCTTGTCTTCATTATCTCCTGA
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--236--2911Chr07:3269123..3269147 (25 bp)
AAGGATTGGTCCTTGCTATCGTCAT
LOC_Os07g06710
OsAffx.16407.1.S1_x_at--515--10731Chr07:3269111..3269135 (25 bp)
TTGCTATCGTCATGCTGATCCTGGC
LOC_Os07g06710
Target Sequence 
GGGAATATGTCTCCTGATGAATTACAAAATATGCTGAATTTTGCTTCTAATATGGGTGGACCTAGTGCTTCCCCCTTGAG
ACCAGAGAATAAGCTTCAATCTTCATCAAGAGCCACAACAAGTAGTACTTCCCAGAGATCAGTGGATAACAGCCAACCTT
CATCTTCTCAAAATGTCATGGAAAATCCTCATGAAATATTAAGCAACCAAAGGATGGGTGAATCATCATCCCCTGGTGCA
CCTTCTACAGCTGATATGCAGGAAACCATGAGAAATGCTATGAAAGATCCTGCGATGCGGAAGATGTATGCATCCATGAT
GAAGAACATCAGTCCAGAGATGATGTCAAGCATGAGTGAGCAGTTTGGAATGAAAATGACGAAGGAGGATGCTGCCAAAG
CTCAAGAAGCCTTGTCTTCATTATCTCCTGAGGCTTTGGATAGAATGATGAAATGGATGGACCGAGCACAGCAAGGAGTA
GAAGCTGCGAAGAAAACCAAGAACTGGCTGTTAGGCAGGAAAGGATTGGTCCTTGCTATCGTCATGCTGATCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16407.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis