Browse Element(s) Details


OsAffx.28314.1.S1_x_at

Description gb:NM_186413.1
DB_XREF= gi:34899911
TID=OsAffx.28314.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1714_H10.40 (OJ1714_H10.40), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0679011/11VQ motif family protein, expressed
LOC_Os07g067602/11VQ motif family protein
LOC_Os07g067501/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28314.1.S1_x_at--108--8112Chr07:3311920..3311944 (25 bp)
GGACCGGTGATCGTGTACGAGCTCA
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--80--7433Chr07:3311932..3311956 (25 bp)
GTGTACGAGCTCACGCCCAGGGTCG
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--1128--9411Chr07:3311954..3311978 (25 bp)
TCGTCCACGCGCAGCCGGAGGAGTT
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--125--4331Chr07:3311984..3312008 (25 bp)
CCATCGTGCAGAAGCTCACCGGCAA
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--32--4511Chr07:3312033..3312057 (25 bp)
GCCGTCGGATCCAACCGCGACATTG
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--716--2611Chr07:3312045..3312069 (25 bp)
AACCGCGACATTGCCGGACCTGGTG
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--1034--1811Chr07:3312098..3312122 (25 bp)
ACCCACTGGTGCTCGCGCTTGGGCA
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--1160--9291Chr07:3312138..3312162 (25 bp)
TCCGCCGGCGATTGACGACAACGAC
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--783--5831Chr07:3312175..3312199 (25 bp)
GACCATTCGGCGCATCCATTTCTTC
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--672--191Chr07:3312192..3312216 (25 bp)
ATTTCTTCTTCCATCTCCGGCGGCT
LOC_Os07g06790
OsAffx.28314.1.S1_x_at--324--10591Chr07:3312224..3312248 (25 bp)
TTCTGTCGCCGAGTAGCCTCTTCTT
LOC_Os07g06790
Target Sequence 
GGACCGGTGATCGTGTACGAGCTCACGCCCAGGGTCGTCCACGCGCAGCCGGAGGAGTTCAGGGCCATCGTGCAGAAGCT
CACCGGCAAGCCGTCGACGGCGACGGCGACGGCGCCGTCGGATCCAACCGCGACATTGCCGGACCTGGTGGCCGGAGGCA
GGGCCGCCGCCGCCGCCGACCCACTGGTGCTCGCGCTTGGGCAGCAGCGTCAGCCTGCTCCGCCGGCGATTGACGACAAC
GACGACGACGACGACGACCATTCGGCGCATCCATTTCTTCTTCCATCTCCGGCGGCTGCTTCTCTTCTGTCGCCGAGTAG
CCTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28314.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis