Browse Element(s) Details


OsAffx.28312.1.S1_at

Description gb:NM_186410.1
DB_XREF= gi:34899905
GEN=OJ1714_H10.36
TID=OsAffx.28312.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1714_H10.36 (OJ1714_H10.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g067506/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06760OsAffx.28312.2.S1_at11/117+3299802..3300365VQ motif family protein
LOC_Os07g06760OsAffx.28314.1.S1_x_at2/117+3299802..3300365VQ motif family protein
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28312.1.S1_at--767--8351Chr07:3295403..3295427 (25 bp)
GGCGGCTTCAACCTTGACGACATTG
LOC_Os07g06750
OsAffx.28312.1.S1_at--792--4251Chr07:3295447..3295471 (25 bp)
CCGGAGGTGATCACGCCGCTGCAGC
LOC_Os07g06750
OsAffx.28312.1.S1_at--872--1771Chr07:3295577..3295601 (25 bp)
ACCGGCGGATGCTTTTCTTCTGTCG
LOC_Os07g06750
OsAffx.28312.1.S1_at--845--9451Chr07:3295595..3295619 (25 bp)
TCTGTCGCCCAGTAGTTTCTTCTTG
LOC_Os07g06750
OsAffx.28312.1.S1_at--576--1171Chr07:3295605..3295629 (25 bp)
AGTAGTTTCTTCTTGTCGCCAACCA
LOC_Os07g06750
OsAffx.28312.1.S1_at--233--4391Chr07:3295622..3295646 (25 bp)
GCCAACCACGATGCATGCGTTACAA
LOC_Os07g06750
OsAffx.28312.1.S1_at--326--8192Chr08:9290110..9290156 (25 bp)
GGAAGCAACGACGAGCACTGGTCTT
NONE
OsAffx.28312.1.S1_at--1001--5771Chr07:3297541..3297565 (25 bp)
GACGAGCACTGGTCTTGGTGTACAA
NONE
OsAffx.28312.1.S1_at--236--8615Chr08:9290134..9290158 (25 bp)
TGGTGTACAATCTGGGAAGTCTTCA
NONE
OsAffx.28312.1.S1_at--255--7614Chr08:9290147..9290171 (25 bp)
GGGAAGTCTTCACAAGATACAGTCA
NONE
OsAffx.28312.1.S1_at--419--6471Chr08:9290162..9290318 (25 bp)
GATACAGTCAATCTCCACGCCGATG
NONE
Target Sequence 
GGCGGCTTCAACCTTGACGACATTGCCGGCGGCTGATCAGGTGGCCGGAGGTGATCACGCCGCTGCAGCGGCGGCCGCCG
CCGACCCACTGGTGCTCACGCTTGGGCAGCAGCGTCAGCCTGCTCCGGCGCCGGCGATCGACGGCGACCATCCGGCGGCG
CCGCCTCATTCTCCACCGGCGGATGCTTTTCTTCTGTCGCCCAGTAGTTTCTTCTTGTCGCCAACCACGATGCATGCGTT
ACAAGAGNNNGNNGCNNNNNNNNNNGTGGTGGAAGCAACGACGAGCACTGGTCTTGGTGTACAATCTGGGAAGTCTTCAC
AAGATACAGTCAATCTCCACGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis