Browse Element(s) Details


Os.7413.1.S1_at

Description gb:AK065877.1
DB_XREF= gi:32975895
TID=Os.7413.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.29 (OJ1714_H10.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050G10, full insert sequence.
FL= gb:AK065877.1 gb:AK062039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0671011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g06750OsAffx.28312.1.S1_at6/117+3295140..3295667VQ motif family protein, expressed
LOC_Os07g06750OsAffx.28314.1.S1_x_at1/117+3295140..3295667VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0048366biological_processleaf development
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7413.1.S1_at--404--491Chr07:3269061..3269085 (25 bp)
ATCGGTGGGTGATGTCCTGAATGCA
LOC_Os07g06710
Os.7413.1.S1_at--1027--7251Chr07:3269048..3269072 (25 bp)
GTCCTGAATGCAGAGATCGGCTGTA
LOC_Os07g06710
Os.7413.1.S1_at--119--6411Chr07:3269034..3269058 (25 bp)
GATCGGCTGTAACTAGCTTGCAATT
LOC_Os07g06710
Os.7413.1.S1_at--961--191Chr07:3269012..3269036 (25 bp)
ATTTGCAAATAATCGTCGGGTAGCG
LOC_Os07g06710
Os.7413.1.S1_at--678--7691Chr07:3268995..3269019 (25 bp)
GGGTAGCGATATTGCGTGCTTCCAC
LOC_Os07g06710
Os.7413.1.S1_at--1001--10672Chr11:12775584..12775692 (25 bp)
TTCCACTTTCTAACACCTGCTGAAA
NONE
Os.7413.1.S1_at--142--1771Chr07:3268962..3268986 (25 bp)
ACCTGCTGAAATTCTCCATGGGAAG
LOC_Os07g06710
Os.7413.1.S1_at--240--9491Chr07:3268915..3268939 (25 bp)
TCTGCTGCTTTCTTGTAACACTGTT
LOC_Os07g06710
Os.7413.1.S1_at--625--7051Chr07:3268901..3268925 (25 bp)
GTAACACTGTTCGTTCTTATTCTTT
LOC_Os07g06710
Os.7413.1.S1_at--573--6731Chr07:3268889..3268913 (25 bp)
GTTCTTATTCTTTTTGTCGTGTCGA
LOC_Os07g06710
Os.7413.1.S1_at--728--7171Chr07:3268874..3268898 (25 bp)
GTCGTGTCGAGTCATAATTATTTGT
LOC_Os07g06710
Target Sequence 
ATCGGTGGGTGATGTCCTGAATGCAGAGATCGGCTGTAACTAGCTTGCAATTTGCAAATAATCGTCGGGTAGCGATATTG
CGTGCTTCCACTTTCTAACACCTGCTGAAATTCTCCATGGGAAGGAAGGGGTATGAATTCGATGGATCTGCTGCTTTCTT
GTAACACTGTTCGTTCTTATTCTTTTTGTCGTGTCGAGTCATAATTATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis