Browse Element(s) Details


OsAffx.22473.1.S1_at

Description tigr:9635.m00610
TID=OsAffx.22473.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0670010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06720OsAffx.16128.1.S1_s_at11/117+3277338..3279613hypothetical protein
LOC_Os07g06730OsAffx.28310.1.S1_at11/117+3283482..3285727F-box domain containing protein
LOC_Os07g06730OsAffx.28310.2.S1_x_at10/117+3283482..3285727F-box domain containing protein
LOC_Os07g06740Os.12665.1.S1_at11/117+3286778..3291591Calcium-dependent protein kinase, isoform AK1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22473.1.S1_at--793--8651Chr07:3264712..3264736 (25 bp)
TGTGACCCAAACAACTTGCCGGCGG
LOC_Os07g06700
OsAffx.22473.1.S1_at--292--4491Chr07:3264695..3264719 (25 bp)
GCCGGCGGCCATCGTTCTTGTGTTT
LOC_Os07g06700
OsAffx.22473.1.S1_at--751--511Chr07:3264588..3264709 (25 bp)
ATCGTTCTTGTGTTTCCGGGCGGCG
LOC_Os07g06700
OsAffx.22473.1.S1_at--162--911Chr07:3264508..3264532 (25 bp)
AGGCGGAGAGAGTCGTCCTCGGCTG
LOC_Os07g06700
OsAffx.22473.1.S1_at--72--1591Chr07:3264476..3264500 (25 bp)
AGCCGCTGGCCCTGCCGGTTCGTGA
LOC_Os07g06700
OsAffx.22473.1.S1_at--331--4491Chr07:3264463..3264487 (25 bp)
GCCGGTTCGTGAGGTGCGACCGCCA
LOC_Os07g06700
OsAffx.22473.1.S1_at--596--1611Chr07:3264430..3264454 (25 bp)
AGCTGAGCGTGGTGAGGATGAACCT
LOC_Os07g06700
OsAffx.22473.1.S1_at--227--8111Chr07:3264405..3264429 (25 bp)
GGACGAGGCGTACGACCGCATCCTT
LOC_Os07g06700
OsAffx.22473.1.S1_at--391--4791NONE
GCTCCAGCTGCAGGTTATTGTGCAG
NONE
OsAffx.22473.1.S1_at--880--1011Chr07:3263693..3263717 (25 bp)
AGGTTATTGTGCAGGATGGGCATAA
LOC_Os07g06700
OsAffx.22473.1.S1_at--968--4991Chr07:3263683..3263707 (25 bp)
GCAGGATGGGCATAAGTCAGCAACT
LOC_Os07g06700
Target Sequence 
TGTGACCCAAACAACTTGCCGGCGGCCATCGTTCTTGTGTTTCCGGGCGGCGAGGACCCGCCGGAACAAGGACGAGTGCC
GGCGGCTGGCCCGGCGCCGGCGCTGGCGAAGGCGGCGGCGGTGTCGGCGGAGGTCAGGGCGGTGCTCGCCGGGCAGGTGG
ACGCGTGGGTCAAGGAGGCGGAGAGAGTCGTCCTCGGCTGCACGAGCAGCCGCTGGCCCTGCCGGTTCGTGAGGTGCGAC
CGCCACGGCGAGCAGCTGAGCGTGGTGAGGATGAACCTGGACGAGGCGTACGACCGCATCCTTCCCGTCGTCGCCCAGAT
CGACACCGCGCACCGCCTGCATCACTTGCTCCAGCTGCAGGTTATTGTGCAGGATGGGCATAAGTCAGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis