Browse Element(s) Details


Os.11753.2.S1_at

Description gb:NM_186397.1
DB_XREF= gi:34899879
GEN=OJ1714_H10.23
TID=Os.11753.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.23 (OJ1714_H10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1714_H10.23 (OJ1714_H10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0666010/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06710OsAffx.16407.1.S1_x_at11/117+3268691..3274233TPR Domain containing protein, expressed
LOC_Os07g06710Os.7413.1.S1_at11/117+3268691..3274233TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11753.2.S1_at--878--4651Chr07:3245313..3245377 (25 bp)
GCGTCCCAGGTGGTAGCTGTTCGAT
LOC_Os07g06660
Os.11753.2.S1_at--20--4751Chr07:3245298..3245322 (25 bp)
GCTGTTCGATTGAGTGTTCCTGTTA
LOC_Os07g06660
Os.11753.2.S1_at--996--5231Chr07:3245283..3245307 (25 bp)
GTTCCTGTTAAAGATTTACTGGCTG
LOC_Os07g06660
Os.11753.2.S1_at--335--9931Chr07:3245267..3245291 (25 bp)
TACTGGCTGATTTCGGGAGTGTTTC
LOC_Os07g06660
Os.11753.2.S1_at--1011--131Chr07:3245258..3245282 (25 bp)
ATTTCGGGAGTGTTTCAAGAATCAA
LOC_Os07g06660
Os.11753.2.S1_at--1160--3211Chr07:3245243..3245267 (25 bp)
CAAGAATCAAGATCAGTCTGAACTC
LOC_Os07g06660
Os.11753.2.S1_at--347--9471Chr07:3245227..3245251 (25 bp)
TCTGAACTCTGAACTGTACCCTGGA
LOC_Os07g06660
Os.11753.2.S1_at--811--8971Chr07:3245218..3245242 (25 bp)
TGAACTGTACCCTGGAGCTACATAT
LOC_Os07g06660
Os.11753.2.S1_at--446--8751Chr07:3245213..3245237 (25 bp)
TGTACCCTGGAGCTACATATGAACA
LOC_Os07g06660
Os.11753.2.S1_at--124--1211NONE
AGTTAGTAAATCTTGAACCTGCTTA
NONE
Os.11753.2.S1_at--346--1671Chr07:3243449..3243469 (21 bp)
AGCCGGAATCAAATACACACTTAGC
LOC_Os07g06660
Target Sequence 
GCGTCCCAGGTGGTAGCTGTTCGATTGAGTGTTCCTGTTAAAGATTTACTGGCTGATTTCGGGAGTGTTTCAAGAATCAA
GATCAGTCTGAACTCTGAACTGTACCCTGGAGCTACATATGAACAAGAGTTAGTAAATCTTGAACCTGCTTATGGAGTTG
TTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGCTTGGTCTTAAG
GTGAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGAT
GGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAG
ATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11753.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis