Browse Element(s) Details


Os.33534.1.S1_s_at

Description gb:AK100222.1
DB_XREF= gi:32985431
TID=Os.33534.1
CNT=6
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.33534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047G10, full insert sequence.
FL= gb:AK100222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0662011/11YABBY protein, putative, expressed
LOC_Os01g592201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0010254biological_processnectary development
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048440biological_processcarpel development
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33534.1.S1_s_at--828--231Chr07:3227144..3227168 (25 bp)
ATATATTATTATCGCGTGTGCCCCT
LOC_Os07g06620
Os.33534.1.S1_s_at--186--3752Chr07:3227171..3227195 (25 bp)
CTCTTCGCCGCGTAATTAATTAATC
LOC_Os07g06620
Os.33534.1.S1_s_at--891--131Chr07:3227201..3227225 (25 bp)
ATTAATTACGTACGACCTACTGTGT
LOC_Os07g06620
Os.33534.1.S1_s_at--795--1731Chr07:3227215..3227239 (25 bp)
ACCTACTGTGTTATGCTATCGATCC
LOC_Os07g06620
Os.33534.1.S1_s_at--1157--2031Chr07:3227291..3227315 (25 bp)
ACTATTATACGTACGTGCTGTGCTA
LOC_Os07g06620
Os.33534.1.S1_s_at--614--7291Chr07:3227305..3227329 (25 bp)
GTGCTGTGCTATGTACGTAGACAAC
LOC_Os07g06620
Os.33534.1.S1_s_at--461--2411Chr07:3227333..3227357 (25 bp)
AAAAAATGTGCGTGATGAGTTCTAC
LOC_Os07g06620
Os.33534.1.S1_s_at--883--6991Chr07:3227361..3227385 (25 bp)
GTACGTACGTACTGTGTTCTAGTGT
LOC_Os07g06620
Os.33534.1.S1_s_at--510--6731Chr07:3227376..3227400 (25 bp)
GTTCTAGTGTTTTAATTTGTATCCG
LOC_Os07g06620
Os.33534.1.S1_s_at--702--10171Chr07:3227391..3227415 (25 bp)
TTTGTATCCGAACCAAGGAGTTGTT
LOC_Os07g06620
Os.33534.1.S1_s_at--385--5111Chr07:3227429..3227453 (25 bp)
GCACATGCACTGGACTTGAATCTGG
LOC_Os07g06620
Target Sequence 
ATATATTATTATCGCGTGTGCCCCTCTCTCTTCGCCGCGTAATTAATTAATCAGTTAATTAATTACGTACGACCTACTGT
GTTATGCTATCGATCCNGTGTTAATTAATTACCTACGTATCTTGATTAATTAGTCTCGTATTATACGTACTATTATACGT
ACGTGCTGTGCTATGTACGTAGACAACAAAAAAAAATGTGCGTGATGAGTTCTACTACGTACGTACGTACTGTGTTCTAG
TGTTTTAATTTGTATCCGAACCAAGGAGTTGTTTAATTAACTGCATGCACATGCACTGGACTTGAATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33534.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis