Browse Element(s) Details


Os.18418.1.S1_at

Description gb:AK062586.1
DB_XREF= gi:32972604
TID=Os.18418.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.16 (OJ1714_H10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F04, full insert sequence.
FL= gb:AK062586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0660011/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18418.1.S1_at--983--1031Chr07:3202021..3202045 (25 bp)
AGGTGCTCGCCCTCCACGAGGACGG
LOC_Os07g06600
Os.18418.1.S1_at--333--1491Chr07:3202074..3202098 (25 bp)
AGCAACAAAAACAGGAGCGCCGCCG
LOC_Os07g06600
Os.18418.1.S1_at--288--9631Chr07:3202234..3202258 (25 bp)
TCATGTGCGCGCTTTGCTTGTAGTA
LOC_Os07g06600
Os.18418.1.S1_at--766--3671Chr07:3202304..3202328 (25 bp)
CTTTTCACTCACTCTAATCTGCTTA
LOC_Os07g06600
Os.18418.1.S1_at--981--3311Chr07:3202313..3202337 (25 bp)
CACTCTAATCTGCTTATATCTTTTT
LOC_Os07g06600
Os.18418.1.S1_at--73--831Chr07:3202362..3202386 (25 bp)
ATGGTTTTGAGTGTGTGTCTGGACT
LOC_Os07g06600
Os.18418.1.S1_at--688--8651Chr07:3202375..3202399 (25 bp)
TGTGTCTGGACTTAGTGGTTGGCCT
LOC_Os07g06600
Os.18418.1.S1_at--631--7511Chr07:3202389..3202413 (25 bp)
GTGGTTGGCCTGTCATGTACATAAA
LOC_Os07g06600
Os.18418.1.S1_at--686--731Chr07:3202403..3202427 (25 bp)
ATGTACATAAACTACCACTACTGCT
LOC_Os07g06600
Os.18418.1.S1_at--431--4371Chr07:3202417..3202441 (25 bp)
CCACTACTGCTACTAGTACTTGCTT
LOC_Os07g06600
Os.18418.1.S1_at--579--1171Chr07:3202431..3202455 (25 bp)
AGTACTTGCTTCAGTTAAACTACAT
LOC_Os07g06600
Target Sequence 
AGGTGCTCGCCCTCCACGAGGACGGCCGCCTCCTCGCCCTCCTCTCGCCGGGCAGCAACAAAAACAGGAGCGCCGCCGCC
GCCGCCGCCAAGTGCGACGCCTGCGGGGGGCTCAGGTTCGTGGTGTGCGGCGAGTGCGACGGCAGCCGCAAGGTGTTCGN
CGGCGAGCGCGGTCGCGGCGTGCGGTGCCGCGGCTGCAACGAGAACGGCCTCGTCATGTGCGCGCTTTGCTTGTAGTAGC
AAAGTAAAAATTAATTAGCGGTTAATTGNCAATTACCACCTCCCTTTTCACTCACTCTAATCTGCTTATATCTTTTTAGT
AGTAATTAATTACCCCTCTTGATGGTTTTGAGTGTGTGTCTGGACTTAGTGGTTGGCCTGTCATGTACATAAACTACCAC
TACTGCTACTAGTACTTGCTTCAGTTAAACTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis