Browse Element(s) Details


OsAffx.22478.1.S1_at

Description tigr:9635.m00594
TID=OsAffx.22478.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0654011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22478.1.S1_at--1057--3331Chr07:3178690..3178714 (25 bp)
CACGTCACGTCAATCGATTCCGACT
LOC_Os07g06540
OsAffx.22478.1.S1_at--364--4091Chr07:3178710..3178734 (25 bp)
CGACTCCGAGGAGCCAATTAATGGG
LOC_Os07g06540
OsAffx.22478.1.S1_at--883--5851Chr07:3178720..3178744 (25 bp)
GAGCCAATTAATGGGCGCCGGCGCC
LOC_Os07g06540
OsAffx.22478.1.S1_at--132--8011Chr07:3178769..3178793 (25 bp)
GGAGGAGGCTCATCGTACAAAACAA
LOC_Os07g06540
OsAffx.22478.1.S1_at--1091--2191Chr07:3178785..3178809 (25 bp)
ACAAAACAAGCTGGTCCGGCGCCGC
LOC_Os07g06540
OsAffx.22478.1.S1_at--1019--9571Chr07:3178845..3178869 (25 bp)
TCTTCCTGATCATGGCCGGCATCAC
LOC_Os07g06540
OsAffx.22478.1.S1_at--729--6431Chr07:3178852..3178876 (25 bp)
GATCATGGCCGGCATCACGCAGCTC
LOC_Os07g06540
OsAffx.22478.1.S1_at--342--391Chr07:3178865..3178889 (25 bp)
ATCACGCAGCTCTGCAAACGCGTCT
LOC_Os07g06540
OsAffx.22478.1.S1_at--94--1871Chr07:3178941..3178965 (25 bp)
ACGACGATGGCATTGTGGTCGCCGT
LOC_Os07g06540
OsAffx.22478.1.S1_at--531--1771Chr07:3179112..3179136 (25 bp)
ACCGGGACTGCATCTTCACGTGGCT
LOC_Os07g06540
OsAffx.22478.1.S1_at--834--1971Chr07:3179118..3179142 (25 bp)
ACTGCATCTTCACGTGGCTCCGGCG
LOC_Os07g06540
Target Sequence 
CACGTCACGTCAATCGATTCCGACTCCGAGGAGCCAATTAATGGGCGCCGGCGCCGGCGACTGGCCCGTCTTCGTCGACG
GAGGAGGCTCATCGTACAAAACAAGCTGGTCCGGCGCCGCCGCCGTCATCGTCTGCCTCTGCGCCGTCGCCGCCGTCTTC
CTGATCATGGCCGGCATCACGCAGCTCTGCAAACGCGTCTTCCCTGCGGCGCCGCCCGCGCCGCCGCCTCAACGCCGGCG
CGACGACGACGACGACGATGGCATTGTGGTCGCCGTCGGCATCGACGAGGCGACGCTGCAGGCGCTGCCGCTGGTGCTGT
ACGGCGAGGCGAGGACGGCGCAGACGAGCTGCGCCGTCTGCCTGGAGAGCTACGGCGGCGGCGACGTGCTCCGGGCGCTG
CCGGAGTGCGGCCACCTGTTCCACCGGGACTGCATCTTCACGTGGCTCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis