Browse Element(s) Details


OsAffx.16125.1.S1_at

Description tigr:9635.m00597
TID=OsAffx.16125.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0657011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16125.1.S1_at--113--971Chr07:3189485..3189509 (25 bp)
AGGACGCCTCTGAACTGGAGGACCA
LOC_Os07g06570
OsAffx.16125.1.S1_at--285--4351Chr07:3189463..3189487 (25 bp)
CCAGGTTGCAGGTCGCCATAGATGT
LOC_Os07g06570
OsAffx.16125.1.S1_at--438--311Chr07:3189271..3189295 (25 bp)
ATACCTGTACTACTTCTGTGATCCT
LOC_Os07g06570
OsAffx.16125.1.S1_at--615--9231Chr07:3189239..3189263 (25 bp)
TCCATGTGTCGGTCAACTCAAGCAA
LOC_Os07g06570
OsAffx.16125.1.S1_at--391--151Chr07:3189099..3189123 (25 bp)
ATATCAGTGTCATCGGTTACGACCC
LOC_Os07g06570
OsAffx.16125.1.S1_at--607--6691Chr07:3188890..3188914 (25 bp)
GTTCCAGTATGGTGTGCTGATCCTT
LOC_Os07g06570
OsAffx.16125.1.S1_at--274--6371Chr07:3188872..3188896 (25 bp)
GATCCTTGAGCTAGTGACCGGGCAA
LOC_Os07g06570
OsAffx.16125.1.S1_at--189--8071Chr07:3188740..3188764 (25 bp)
GGAGCTTCGGAACCTTGTGATCATT
LOC_Os07g06570
OsAffx.16125.1.S1_at--917--3591Chr07:3188719..3188743 (25 bp)
CATTGCTAGGTTGTGCACAAGGCCT
LOC_Os07g06570
OsAffx.16125.1.S1_at--723--2971Chr07:3188683..3188707 (25 bp)
AATGGTTTCGATTCCGCTCATTCTT
LOC_Os07g06570
OsAffx.16125.1.S1_at--1029--4811Chr07:3188668..3188692 (25 bp)
GCTCATTCTTCGGTATTTGCAAGGG
LOC_Os07g06570
Target Sequence 
AGGACGCCTCTGAACTGGAGGACCAGGTTGCAGGTCGCCATAGATGTTGCAGCAGCATTGGAATACCTGTACTACTTCTG
TGATCCTCCGGTGTTCCATGTGTCGGTCAACTCAAGCAATGTGATGATGGATGCCAATTTTGTCGCAAAGTTATCAGATA
TCAGTGTCATCGGTTACGACCCGAAACGAACGGTGGAATCCAATGCTGCATCTTTTGAAGANNNAATTCAGCAGAGGAGA
AGGGACCTGGTGTTCCAGTATGGTGTGCTGATCCTTGAGCTAGTGACCGGGCAATCGCCGGGCGGCGAAGGCGAGCTCGT
GCAGTGGGTGCAGGAGCCTGGATTTGCCTGCACAATGTACAAAATGGTAGATGCAGATCTTGGCAATATCTATGACTCCA
AGGAGCTTCGGAACCTTGTGATCATTGCTAGGTTGTGCACAAGGCCTGGAAATGATGCAATGGTTTCGATTCCGCTCATT
CTTCGGTATTTGCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis