Browse Element(s) Details


OsAffx.32032.4.S1_s_at

Description tigr:9640.m03394
TID=OsAffx.32032.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4454011/11hypothetical protein
LOC_Os07g0661011/11ubiquitin-specific protease, putative, expressed
LOC_Os01g4860011/11CDS, putative
LOC_Os09g1748010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44470NANA11+26400840..26401472hypothetical protein
LOC_Os11g44480NANA11+26402451..26403839retrotransposon protein, putative, unclassified
LOC_Os11g44490NANA11+26407444..26408076hypothetical protein
LOC_Os11g44500OsAffx.31472.1.S1_at11/1111+26409687..26411580Protein kinase domain containing protein, expressed
LOC_Os11g44510OsAffx.31473.1.S1_at11/1111+26414610..26414983hypothetical protein
LOC_Os11g44520OsAffx.7410.1.S1_at11/1111+26416909..26418345hypothetical protein
LOC_Os11g44530NANA11+26418728..26424578retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540OsAffx.32032.4.S1_s_at11/1111+26425652..26426303hypothetical protein
LOC_Os11g44550OsAffx.7411.1.S1_at11/1111+26427362..26428630Protein kinase domain containing protein
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed
LOC_Os11g44570OsAffx.7412.1.S1_at11/1111+26442992..26444385hypothetical protein
LOC_Os11g44580OsAffx.7413.1.S1_at11/1111+26446344..26448788NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32032.4.S1_s_at--497--8875Chr12:21309214..21309238 (25 bp)
TGATGAGTGCGTGAGACCTATAACT
NONE
OsAffx.32032.4.S1_s_at--372--6295Chr12:21309215..21309239 (25 bp)
GATGAGTGCGTGAGACCTATAACTG
NONE
OsAffx.32032.4.S1_s_at--763--695Chr12:21309216..21309240 (25 bp)
ATGAGTGCGTGAGACCTATAACTGA
NONE
OsAffx.32032.4.S1_s_at--638--8895Chr12:21309217..21309241 (25 bp)
TGAGTGCGTGAGACCTATAACTGAA
NONE
OsAffx.32032.4.S1_s_at--710--6115Chr12:21309218..21309242 (25 bp)
GAGTGCGTGAGACCTATAACTGAAG
NONE
OsAffx.32032.4.S1_s_at--612--7295Chr12:21309220..21309244 (25 bp)
GTGCGTGAGACCTATAACTGAAGAC
NONE
OsAffx.32032.4.S1_s_at--903--8655Chr12:21309221..21309245 (25 bp)
TGCGTGAGACCTATAACTGAAGACA
NONE
OsAffx.32032.4.S1_s_at--5--4675Chr12:21309222..21309246 (25 bp)
GCGTGAGACCTATAACTGAAGACAG
NONE
OsAffx.32032.4.S1_s_at--808--3996Chr12:21309223..21309247 (25 bp)
CGTGAGACCTATAACTGAAGACAGT
NONE
OsAffx.32032.4.S1_s_at--434--7396Chr12:21309224..21309248 (25 bp)
GTGAGACCTATAACTGAAGACAGTA
NONE
OsAffx.32032.4.S1_s_at--486--8995Chr12:21309238..21309262 (25 bp)
TGAAGACAGTATAAAGACACCTGCT
NONE
Target Sequence 
TGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32032.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis