Browse Element(s) Details

Os.27110.1.A1_at

Description

gb:AK105217.1
DB_XREF= gi:32990426
TID=Os.27110.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C10, full insert sequence.
FL= gb:AK105217.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g44560	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g44500	OsAffx.31472.1.S1_at	11/11	11	+	26409687..26411580	Protein kinase domain containing protein, expressed
LOC_Os11g44510	OsAffx.31473.1.S1_at	11/11	11	+	26414610..26414983	hypothetical protein
LOC_Os11g44520	OsAffx.7410.1.S1_at	11/11	11	+	26416909..26418345	hypothetical protein
LOC_Os11g44530	NA	NA	11	+	26418728..26424578	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540	OsAffx.32032.4.S1_s_at	11/11	11	+	26425652..26426303	hypothetical protein
LOC_Os11g44550	OsAffx.7411.1.S1_at	11/11	11	+	26427362..26428630	Protein kinase domain containing protein
LOC_Os11g44560	Os.27110.1.A1_at	11/11	11	+	26433212..26440078	Protein kinase domain containing protein, expressed
LOC_Os11g44570	OsAffx.7412.1.S1_at	11/11	11	+	26442992..26444385	hypothetical protein
LOC_Os11g44580	OsAffx.7413.1.S1_at	11/11	11	+	26446344..26448788	NB-ARC domain containing protein, expressed
LOC_Os11g44590	Os.50949.1.S1_at	1/11	11	+	26453294..26456554	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44600	OsAffx.31474.1.S1_at	11/11	11	+	26460730..26461576	hypothetical protein
LOC_Os11g44610	NA	NA	11	+	26464864..26470718	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0005886	cellular_component	plasma membrane
GO:0009986	cellular_component	cell surface
GO:0030139	cellular_component	endocytic vesicle
GO:0016301	molecular_function	kinase activity
GO:0019199	molecular_function	transmembrane receptor protein kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27110.1.A1_at--569--847	1	Chr11:26439493..26439517 (25 bp)	TGGCGATAGCCCCATGGATTCTTTG	LOC_Os11g44560
Os.27110.1.A1_at--38--793	1	Chr11:26439508..26439532 (25 bp)	GGATTCTTTGGTTAACCACGCGCTG	LOC_Os11g44560
Os.27110.1.A1_at--296--379	1	Chr11:26439716..26439740 (25 bp)	CTCGTCCGTTGCGATGATGAGTAGC	LOC_Os11g44560
Os.27110.1.A1_at--527--119	1	Chr11:26439735..26439759 (25 bp)	AGTAGCATGGTCTGGGCATCTTCAC	LOC_Os11g44560
Os.27110.1.A1_at--506--387	1	Chr11:26439797..26439821 (25 bp)	CTGTTACACCTTCCCGAGATGTAGA	LOC_Os11g44560
Os.27110.1.A1_at--121--621	1	Chr11:26439820..26439844 (25 bp)	GAGGCCGGGTTAATACAATCTGTTA	LOC_Os11g44560
Os.27110.1.A1_at--610--241	1	Chr11:26439850..26439874 (25 bp)	AAAAATTTGGCATCCTAGCTCCCTG	LOC_Os11g44560
Os.27110.1.A1_at--652--703	1	Chr11:26439934..26439958 (25 bp)	GTAAACAAGTTTCACTGCGGTCTTT	LOC_Os11g44560
Os.27110.1.A1_at--240--383	1	Chr11:26439948..26439972 (25 bp)	CTGCGGTCTTTGTGTAGTGAGGCTA	LOC_Os11g44560
Os.27110.1.A1_at--160--525	1	Chr11:26440007..26440031 (25 bp)	GAATCATACTTCTAGTCCGATTTTA	LOC_Os11g44560
Os.27110.1.A1_at--664--1005	1	Chr11:26440032..26440056 (25 bp)	TAGTTCTTTTTCAGACATGTCCAAA	LOC_Os11g44560

Target Sequence

TGGCGATAGCCCCATGGATTCTTTGGTTAACCACGCGCTGCCACTCATCGATGCGGGGCAGGTGCTCCATCTGCTGGATA
GGCGGCCGGCGGAGGAGCCAACGCCAAGGCAGCTCGAGGCGGCGGACCTGGTGGCACGCACGGCAGCGCACTGCNTGCAA
GAGAATGGGGACGACCGGCCGGCCATGTCGGACGTCNTGACCAGACTCCAGGCGGCGCTGGAGCTCGTCCGTTGCGATGA
TGAGTAGCATGGTCTGGGCATCTTCACGGATGCATGATTTATAGATCATAATACTGCTGTAGTGCTGTTACACCTTCCCG
AGATGTAGAGGCCGGGTTAATACAATCTGTTATCTAAAAAAATTTGGCATCCTAGCTCCCTGGTGAAGGATATGATATGA
TATAGACAAATTAATGTATGGGATTAATACATGATGAGATTGTAAACAAGTTTCACTGCGGTCTTTGTGTAGTGAGGCTA
TCCAAAATTTTCTTTCCACTGGAATTGCTAGTTAGAATCATACTTCTAGTCCGATTTTATAGTTCTTTTTCAGACATGTC
CAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis