Browse Element(s) Details


Os.50949.1.S1_at

Description gb:AK073688.1
DB_XREF= gi:32983711
TID=Os.50949.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055G20, full insert sequence.
FL= gb:AK073688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2201011/11hypothetical protein
LOC_Os11g445901/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50949.1.S1_at--866--5551Chr12:12376413..12376541 (25 bp)
GAAAGCCTCTTAGGTTATCGTTATC
LOC_Os12g22010
Os.50949.1.S1_at--710--6831Chr12:12375426..12375450 (25 bp)
GTTTCACCGCATTCAGTAAGCAAAG
LOC_Os12g22010
Os.50949.1.S1_at--416--4951Chr12:12375418..12375442 (25 bp)
GCATTCAGTAAGCAAAGAGGATCAT
LOC_Os12g22010
Os.50949.1.S1_at--487--6171Chr12:12375402..12375426 (25 bp)
GAGGATCATTTTGAGCCTCACACTA
LOC_Os12g22010
Os.50949.1.S1_at--1145--151Chr12:12375395..12375419 (25 bp)
ATTTTGAGCCTCACACTACTGTTGG
LOC_Os12g22010
Os.50949.1.S1_at--360--5871Chr12:12375390..12375414 (25 bp)
GAGCCTCACACTACTGTTGGTAACT
LOC_Os12g22010
Os.50949.1.S1_at--368--9691Chr12:12375385..12375409 (25 bp)
TCACACTACTGTTGGTAACTTTTTT
LOC_Os12g22010
Os.50949.1.S1_at--913--1412Chr12:12375349..12375373 (25 bp)
AGACAATCACGATCGCAGTCACCAA
LOC_Os12g22010
Os.50949.1.S1_at--40--3451Chr12:12375334..12375358 (25 bp)
CAGTCACCAACCACATGTTGATGAA
LOC_Os12g22010
Os.50949.1.S1_at--676--98512Chr12:4022569..4022592 (24 bp)
TACACTGGCCTAGAAGATCTGCTTA
NONE
Os.50949.1.S1_at--718--6413Chr12:360640..360660 (21 bp)
GATCTGCTTAACTCTTGTGCATATT
NONE
Target Sequence 
GAAAGCCTCTTAGGTTATCGTTATCTTTAGTGCCCATATTATTTGGCTTGGGCAACTATAAGAAACTAATCAGGAAAGGT
AAGCAGCTTATTCTGCACGGTCTTAACGAGGTTATCCCGAGGTGGGCTTGCAACAGGAGAGAGGATGGAAAGTGAAGCCG
TTAGGTTAATTAAACGAAGATTGTTGTACCTTGGCCCTGAAACAATTGAAGAGGGCTCTCTACTTGTGTTGAAAGTTTCA
CCGCATTCAGTAAGCAAAGAGGATCATTTTGAGCCTCACACTACTGTTGGTAACTTTTTTTTTTGGCAAGAAGACAATCA
CGATCGCAGTCACCAACCACATGTTGATGAAAAAAAATACACTGGCCTAGAAGATCTGCTTAACTCTTGTGCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis