Browse Element(s) Details


Os.50949.2.S1_x_at

Description gb:AK059660.1
DB_XREF= gi:32969678
TID=Os.50949.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E01, full insert sequence.
FL= gb:AK059660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2201011/11hypothetical protein
LOC_Os05g484702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50949.2.S1_x_at--581--5451Chr12:12378000..12378024 (25 bp)
GAACGGGCTAACTGAGACCATGGAA
LOC_Os12g22010
Os.50949.2.S1_x_at--708--2711Chr12:12377639..12377663 (25 bp)
AAGCATCGGCAGATTCGATTCACCG
LOC_Os12g22010
Os.50949.2.S1_x_at--485--4071Chr12:12377616..12377640 (25 bp)
CGAGAAGTTCTTCCTCGGTGACACT
LOC_Os12g22010
Os.50949.2.S1_x_at--776--5632Chr12:12377312..12377621 (25 bp)
GACACTGTTGTCCACAAGTTTCTGG
LOC_Os12g22010
Os.50949.2.S1_x_at--1110--7612Chr12:12377131..12377155 (25 bp)
GGGACATTTGTACTTATCTTTTAGC
LOC_Os12g22010
Os.50949.2.S1_x_at--1147--831Chr12:12377100..12377124 (25 bp)
ATGGACCTGAGTTCTCACTGTAGGG
LOC_Os12g22010
Os.50949.2.S1_x_at--258--6093Chr12:12377076..12377100 (25 bp)
GAGTGCAACAATTCCCTGTAACCAA
LOC_Os12g22010
Os.50949.2.S1_x_at--583--5493Chr12:12377022..12377046 (25 bp)
GAACAGGTTCTTCTCCACGAAAATA
LOC_Os12g22010
Os.50949.2.S1_x_at--1007--4951Chr12:12376979..12377003 (25 bp)
GCATAGGATGCAACAACACAGTTTG
LOC_Os12g22010
Os.50949.2.S1_x_at--1114--7052Chr12:12376941..12376965 (25 bp)
GTAAGCTTGTTGTAGCACCACAAAT
LOC_Os12g22010
Os.50949.2.S1_x_at--19--3051Chr12:12376885..12376909 (25 bp)
AATCTTTTGTATGTTTAGGCTACCT
LOC_Os12g22010
Target Sequence 
GAACGGGCTAACTGAGACCATGGAATGATCATGTCATTTTGAAGGATCGGCAATGGTTGTAAGCATCGGCAGATTCGATT
CACCGAGAAGTTCTTCCTCGGTGACACTGTTGTCCACAAGTTTCTGGTTTTGAGAAGACAACAAGTTCTCAGCTTTTTTC
TGAAGTTCTGATGGATGGCACAGTTAGTACTATGGCATGGCAATGGGATTATTGAAGCACTGTAATGAGCTGGTAATAGT
TTTTTTTCCATCTTTGCAAGAGGAGGCAACCTATGGAGATGGTGGGACATTTGTACTTATCTTTTAGCCTTAATATGGAC
CTGAGTTCTCACTGTAGGGAGTGCAACAATTCCCTGTAACCAAAAGTATGAAGTGGACACAGTACAGTTCAAGAACAGGT
TCTTCTCCACGAAAATAAATTGGCAAGGTAAGGATGCATAGGATGCAACAACACAGTTTGTTGTAGTCAATTTGTAAGCT
TGTTGTAGCACCACAAATGATATTTTAGTTGTTTAGAGAGGATAATTGTAATCTTTTGTATGTTTAGGCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50949.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis