Browse Element(s) Details


OsAffx.32278.1.A1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=rps2
TID=OsAffx.32278.1
CNT=1
FEA=DNA_23
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S2 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Ribosomal protein S2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g220002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32278.1.A1_at--1136--2313Chr12:20667436..20667460 (25 bp)
AAAGTCCCGATCTTCCATTGAGAAT
NONE
OsAffx.32278.1.A1_at--501--5253Chr12:20667457..20667481 (25 bp)
GAATCATTGATACAGCTCGCCATTT
NONE
OsAffx.32278.1.A1_at--448--6473Chr12:20667465..20667489 (25 bp)
GATACAGCTCGCCATTTTTTCCAAT
NONE
OsAffx.32278.1.A1_at--1037--3456Chr12:20667588..20667612 (25 bp)
CAGTGTCTTGTCTGAATCGAGAATA
NONE
OsAffx.32278.1.A1_at--1003--15Chr12:20667645..20667669 (25 bp)
ATTGAAATGGTGAGCATCTACCCGA
NONE
OsAffx.32278.1.A1_at--1083--4193Chr12:20667672..20667696 (25 bp)
CCCGCCGAGATGTGCATTCGTACAA
NONE
OsAffx.32278.1.A1_at--256--9273Chr12:20667741..20667765 (25 bp)
TCCGTTTCCCGAGATACTGGTGGTA
NONE
OsAffx.32278.1.A1_at--145--3494Chr12:20667776..20667800 (25 bp)
CAGGCATGGCATATTTCGTTGAATC
NONE
OsAffx.32278.1.A1_at--1062--6634Chr12:20667793..20667817 (25 bp)
GTTGAATCAGTCTTTTTCGCCACAT
NONE
OsAffx.32278.1.A1_at--880--4154Chr12:20667810..20667834 (25 bp)
CGCCACATCGCGTATAAAGGGAATC
NONE
OsAffx.32278.1.A1_at--393--5695Chr12:20667891..20667915 (25 bp)
GACTGATCTTAACGTTGGCGTCGGT
NONE
Target Sequence 
AAAGTCCCGATCTTCCATTGAGAATCATTGATACAGCTCGCCATTTTTTCCAATATCTCACATCGAAATAAATGATTGGT
CTTTAAAAGGAAGGAACGGCATTTTTTACGAATGGGAGATCCTATAAAATGAAGAGCGGTTCGTAAACAAATCAGTGTCT
TGTCTGAATCGAGAATAGCAATTCCACTTCTGGAACCACAGATATAGACATTGAAATGGTGAGCATCTACCCGACGCCCG
CCGAGATGTGCATTCGTACAAAGTAATTTAGTATAGACCATAGAAAGGATTGTCATTTCCGGTTTTCCGTTTCCCGAGAT
ACTGGTGGTAAGTAATAATGCAGGCATGGCATATTTCGTTGAATCAGTCTTTTTCGCCACATCGCGTATAAAGGGAATCG
AACCCAACTCTTCCACTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAAAGGAGACTGATCTTAACGTTGGCGTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32278.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis