Browse Element(s) Details


Os.25308.1.A1_at

Description gb:AK105943.1
DB_XREF= gi:32991152
TID=Os.25308.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C02, full insert sequence.
FL= gb:AK105943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g630506/11expressed protein
LOC_Os12g219301/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein
LOC_Os01g63050Os.25308.1.A1_at6/111+36854891..36856690expressed protein
LOC_Os01g63050OsAffx.28148.1.S1_x_at2/111+36854891..36856690expressed protein
LOC_Os01g63060Os.8957.1.S1_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.2.S1_x_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.1.S1_a_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63080Os.45173.1.S1_x_at1/111+36875130..36883040retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25308.1.A1_at--318--5291Chr01:36856521..36856545 (25 bp)
GAATGGCATTGGCAGTAGCATCAGT
LOC_Os01g63050
Os.25308.1.A1_at--354--5031Chr01:36856532..36856556 (25 bp)
GCAGTAGCATCAGTGTTAGGTGTTC
LOC_Os01g63050
Os.25308.1.A1_at--134--10452Chr12:12349004..12349466 (25 bp)
TTAGGTGTTCTTTTGTATGGTGATA
LOC_Os12g21930
Os.25308.1.A1_at--467--3091Chr01:36856621..36856645 (25 bp)
AATACATGGCTTCCGTAGGTTGTTC
LOC_Os01g63050
Os.25308.1.A1_at--930--4911Chr01:36856629..36856653 (25 bp)
GCTTCCGTAGGTTGTTCAGGGTATT
LOC_Os01g63050
Os.25308.1.A1_at--660--9631Chr01:36856644..36856668 (25 bp)
TCAGGGTATTGACGGTGATATATCC
LOC_Os01g63050
Os.25308.1.A1_at--174--5171Chr01:32159925..32159977 (24 bp)
GAATTGAATGGAACTCCCTCCGTCC
NONE
Os.25308.1.A1_at--962--2431NONE
AAAATCCCTTATACTGTAGGATGGA
NONE
Os.25308.1.A1_at--699--6131Chr01:36856920..36856944 (25 bp)
GAGGGAGTACTATGCTAGTTAGCTC
NONE
Os.25308.1.A1_at--962--1211Chr01:36856951..36856975 (25 bp)
AGTTAGCTCTAGTCGTATGATGATT
NONE
Os.25308.1.A1_at--396--3091Chr01:36857018..36857042 (25 bp)
AATAAGAGCTTCAGATTTCCTTTAA
NONE
Target Sequence 
GAATGGCATTGGCAGTAGCATCAGTGTTAGGTGTTCTTTTGTATGGTGATATATTGGTTATTTTGGAAGGTGGGTGATGG
ATGCAGATCAACAGATGAGAAATACATGGCTTCCGTAGGTTGTTCAGGGTATTGACGGTGATATATCCAATAATAAGTGT
TCTTTTGGAGAATTGAATGGAACTCCCTCCGTCCCATAATATAAGAGATTTTAAGTTTTTGCTTGCAACGTTTGATCACT
CGTTTTATTAAAAAAATTTTGAAATTATTATTTATTTTATTTGTGACTTATTTTATTATCTATAGTACTTTAAGCACAAC
TTTTCGTTTTTTATATTTGCGAAAAAAAATTAAATAAGACGAGTGGTAAACGTTGTAAGCAAAAACTCTCAAAATCCCTT
ATACTGTAGGATGGAGGGAGTACTATGCTAGTTAGCTCTAGTCGTATGATGATTGGAAGAAATCATCAGATGTTTGAAAA
GTTGTAAGAAAGAAATAATAAGAGCTTCAGATTTCCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25308.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis