Browse Element(s) Details


OsAffx.31018.2.S1_x_at

Description tigr:9633.m03469
TID=OsAffx.31018.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5489011/11hypothetical protein
LOC_Os04g2859011/11hypothetical protein
LOC_Os05g3755011/11hypothetical protein
LOC_Os01g6304011/11hypothetical protein
LOC_Os02g4094011/11hypothetical protein
LOC_Os01g1904010/11hypothetical protein
LOC_Os07g321001/11hypothetical protein
LOC_Os11g174401/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31018.2.S1_x_at--413--6556Chr02:24805111..24805213 (25 bp)
GATTTTGGGATGTACGCGCTAGCTG
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--475--7616Chr02:24805226..24805250 (25 bp)
GGGAAGCTAGCCATCAACTTGCACA
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--429--2035Chr02:24805250..24805274 (25 bp)
ACTTCTCGGGCCCAGAGGTAGTATA
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--563--5556Chr02:24805285..24805398 (25 bp)
GAAAGCCACCTGATACTGATTCCTG
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--505--1976Chr02:24805388..24805412 (25 bp)
ACTGATTCCTGTTCACCTATTCAAT
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--691--7618Chr07:19072585..19072609 (25 bp)
GGGAATCACGTTTCACCAGGCATGA
LOC_Os07g32100
OsAffx.31018.2.S1_x_at--383--7116Chr02:24805561..24805585 (25 bp)
GTCTTGCATCTCCAGGGTGGAACAT
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--6--5736Chr02:24805723..24805747 (25 bp)
GACTGTGGCTTTTACGTATTCAACT
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--954--8976Chr02:24805754..24805778 (25 bp)
TGAACTACGATGGTCGTCGTCTTCT
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--228--7216Chr02:24805769..24805793 (25 bp)
GTCGTCTTCTGAACCCTATTACAGA
LOC_Os02g40940
OsAffx.31018.2.S1_x_at--348--6196Chr02:24805901..24805925 (25 bp)
GAGGCAATTTTTGATCCACCTTTTG
LOC_Os02g40940
Target Sequence 
GATTTTGGGATGTACGCGCTAGCTGGTGAGGAATTTTGGGAAGCTAGCCATCAACTTGCACACTTCTCGGGCCCAGAGGT
AGTATATGATGTTTCAGAAAGCCACCTGATACTGATTCCTGTTCACCTATTCAATCATTANGTGCTGTACGTATTTAACA
TGGAGAGCAAGAAGTTATCGGTGCTTGATTCACTAAACACAGAAGATCCACTNGGGGAATCACGTTTCACCAGGCATGAC
AAGATAAAGATCATGGTGTCACAGTGTGTAATGGAATGCATGCGTCTTGCATCTCCAGGGTGGAACATGGACATACTTAA
TTGGGACTTTGAGACAGTTGAAAATATACCAGAGCAGCAGAACGGGGNTGACTGTGGCTTTTACGTATTCAACTNTATGG
TGAACTACGATGGTCGTCGTCTTCTGAACCCTATTACAGAGGACCCGTACTACCTCCGGAGGCAATTTTTGATCCACCTT
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31018.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis