Browse Element(s) Details


Os.9220.2.S1_x_at

Description gb:AK069342.1
DB_XREF= gi:32979366
TID=Os.9220.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013K12, full insert sequence.
FL= gb:AK069342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5493011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9220.2.S1_x_at--1006--2851Chr04:32455461..32455485 (25 bp)
AAGTGCTCTAGATGCAGGCTCAGAA
LOC_Os04g54930
Os.9220.2.S1_x_at--1000--4811Chr04:32455421..32455445 (25 bp)
GCTCTAGACCGGCTGATGACTGGAA
LOC_Os04g54930
Os.9220.2.S1_x_at--530--2111Chr04:32455348..32455372 (25 bp)
ACATGATCGCAGTCATCCAGCAGGG
LOC_Os04g54930
Os.9220.2.S1_x_at--310--8911Chr04:32455314..32455338 (25 bp)
TGAGACTGGCACACATGATGAACTT
LOC_Os04g54930
Os.9220.2.S1_x_at--498--2471Chr04:32453059..32453083 (25 bp)
AACACCACGCCTGACGATGATTAGT
LOC_Os04g54930
Os.9220.2.S1_x_at--953--5671Chr04:32453032..32453056 (25 bp)
GACATAAGTCTTTTGCTCTTGTGAT
LOC_Os04g54930
Os.9220.2.S1_x_at--941--8571Chr04:32453002..32453026 (25 bp)
TGGTTACTTGTTTCACTTCTTCTTC
LOC_Os04g54930
Os.9220.2.S1_x_at--664--7591Chr04:32452927..32452951 (25 bp)
GGGCAAACTTCTATGGTCGTTGTGC
LOC_Os04g54930
Os.9220.2.S1_x_at--749--7171Chr04:32452912..32452936 (25 bp)
GTCGTTGTGCTATCTACCTAAGTTT
LOC_Os04g54930
Os.9220.2.S1_x_at--949--2571Chr04:32452880..32452904 (25 bp)
AACGGTGTAAGATGTGTCTTCCTCC
LOC_Os04g54930
Os.9220.2.S1_x_at--971--7411Chr04:32452867..32452891 (25 bp)
GTGTCTTCCTCCTGAAACGTATGAT
LOC_Os04g54930
Target Sequence 
AAGTGCTCTAGATGCAGGCTCAGAAAACATTGTCCAAGAAGCTCTAGACCGGCTGATGACTGGAAGAACAACGGTAGTTG
TTGCCCACCGTCTCTCCACTATAAGAAATGTTAACATGATCGCAGTCATCCAGCAGGGCCAAGTTGTTGAGACTGGCACA
CATGATGAACTTCTAGCAAAAGGGAGCGCTGGAGCGGCTGATGAAGGGGCGGACCACCGTGCTGGTGGCGCACCGCCTGT
CGACGATCCGAGGCGTGGACCGCATCGCCGTCGTGCAGGATGGCCGGATCGTCGAGCACGGCAGCCACTCTGATCTCGTG
TCCAGGCCGGAGGGGGCGTACTCGCGGTTGCTGCAGCTGCAACACCACGCCTGACGATGATTAGTATGACATAAGTCTTT
TGCTCTTGTGATTGGAATGGTTACTTGTTTCACTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGCTTGGTGGTTAAGTTGA
TGTAGATAACTAGGGCAAACTTCTATGGTCGTTGTGCTATCTACCTAAGTTTAAACTGGAACGGTGTAAGATGTGTCTTC
CTCCTGAAACGTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9220.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis