Browse Element(s) Details


OsAffx.14422.1.S1_at

Description tigr:9632.m05345
TID=OsAffx.14422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5498010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14422.1.S1_at--708--10451Chr04:32481679..32481703 (25 bp)
TTAGCGCCGGTGTTCTTCGATGCAG
LOC_Os04g54980
OsAffx.14422.1.S1_at--262--8031Chr04:32481641..32481665 (25 bp)
GGAGTCGTTGGTTTGAAGCTGTCTT
LOC_Os04g54980
OsAffx.14422.1.S1_at--828--10771Chr04:32481481..32481505 (25 bp)
TTGATGCTATTTGGAACGCCCTTCT
LOC_Os04g54980
OsAffx.14422.1.S1_at--647--8271NONE
GGCATCCTCTCCGTTTTGATATTTA
NONE
OsAffx.14422.1.S1_at--749--7951Chr04:32480526..32480545 (20 bp)
GGATAACAGTTCTTCTCAGGGCATA
LOC_Os04g54980
OsAffx.14422.1.S1_at--511--7591Chr04:32480400..32480424 (25 bp)
GGGCATATATGGCATCCTTTCAGAA
LOC_Os04g54980
OsAffx.14422.1.S1_at--1124--10411Chr04:32479767..32479791 (25 bp)
TTATATTTCTCAATGGTCTACTCTG
LOC_Os04g54980
OsAffx.14422.1.S1_at--871--9531Chr04:32479751..32479775 (25 bp)
TCTACTCTGAAGTGACTGGCTTGAA
LOC_Os04g54980
OsAffx.14422.1.S1_at--630--5391Chr04:32479729..32479753 (25 bp)
GAAGCATATGAGACTCTTCTGGCTT
LOC_Os04g54980
OsAffx.14422.1.S1_at--81--3771Chr04:32479716..32479740 (25 bp)
CTCTTCTGGCTTGGTGTTTATAGAT
LOC_Os04g54980
OsAffx.14422.1.S1_at--594--9911Chr04:32479691..32479715 (25 bp)
TACTGCAAACAAAAGGTGGTCTCAC
LOC_Os04g54980
Target Sequence 
TTAGCGCCGGTGTTCTTCGATGCAGCAAGCGTGGCAATGGAGTCGTTGGTTTGAAGCTGTCTTGNCCGCCGCATCTGCCT
CTCCCGCATCGGCAAGCCTTGCCCCCACTACCTTGGTGGGCAAAGGAATTGAAAGAGGAAGATGAGAAGTTTTTTCCTCT
CGTGGATNTGGATCCCGCTGGGCAGGGGCAGGAAGAGATTGATGCTATTTGGAACGCCCTTCTGTCTGGCCCCCTCCAAC
CTGTCTTGCGCGCGCTGCGGGAGATCGGCGCCGCTGGCAACCTCTTCCGCTGCCGCAGCTTCCACATCGGCATCCTCTCC
GTTTTGATATTTATTTTGTCTTTCAAGGATAACAGTTCTTCTCAGGGCATATATGGCATCCTTTCAGAATTGATCTGGTT
CATTAATGTCCAGTTATATTTCTCAATGGTCTACTCTGAAGTGACTGGCTTGAAGCATATGAGACTCTTCTGGCTTGGTG
TTTATAGATTACTGCAAACAAAAGGTGGTCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis