Browse Element(s) Details


OsAffx.26607.3.S1_at

Description tigr:9632.m05339
TID=OsAffx.26607.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5492010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26607.3.S1_at--940--1571NONE
AGCTCAAGAGTTGTGTTCTCTCGTT
NONE
OsAffx.26607.3.S1_at--355--6011Chr04:32449013..32449037 (25 bp)
GAGAGCGTCATCAAACGCCGGCGAA
LOC_Os04g54920
OsAffx.26607.3.S1_at--1107--2351Chr04:32449001..32449025 (25 bp)
AAACGCCGGCGAAGTCTGCCCAAGC
LOC_Os04g54920
OsAffx.26607.3.S1_at--98--2851Chr04:32448990..32449014 (25 bp)
AAGTCTGCCCAAGCATTTCACGTGG
LOC_Os04g54920
OsAffx.26607.3.S1_at--767--2712Chr09:15095018..15095038 (21 bp)
AAGCATTTCACGTGGATCTGGTCAT
NONE
OsAffx.26607.3.S1_at--917--7811Chr04:32448961..32448985 (25 bp)
GGTCATCAGCGACCCATGATTGGTG
LOC_Os04g54920
OsAffx.26607.3.S1_at--395--391Chr04:32448957..32448981 (25 bp)
ATCAGCGACCCATGATTGGTGGAAA
LOC_Os04g54920
OsAffx.26607.3.S1_at--63--1492Chr03:2325941..2326281 (25 bp)
AGCAAGGAGATATCTGGCTGTGTTG
NONE
OsAffx.26607.3.S1_at--178--10751Chr04:32448882..32448906 (25 bp)
TTGACAATAGGGTGACATCGATGGC
LOC_Os04g54920
OsAffx.26607.3.S1_at--874--3431Chr04:32448853..32448877 (25 bp)
CAGTGCGACATCTCTAATGCAACGA
LOC_Os04g54920
OsAffx.26607.3.S1_at--536--5671Chr04:32448847..32448871 (25 bp)
GACATCTCTAATGCAACGACGACGA
LOC_Os04g54920
Target Sequence 
AGCTCAAGAGTTGTGTTCTCTCGTTTGCATTACAGGGATCATCAACCACGCGTCACGGTTGGTACGACATCGTTTGTGGT
GTAGCGATTGCATGGCGTCCTGGACTTGTTCTGGTTGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGCGAGAGTTA
TCCCCCTCACCAGGAGATCGAGCCACGAGAGAGAGCGTCATCAAACGCCGGCGAAGTCTGCCCAAGCATTTCACGTGGAT
CTGGTCATCAGCGACCCATGATTGGTGGAAAGGTGGATAGTTGGGGAGTGAGAGCAAGGAGATATCTGGCTGTGTTGGGG
ATTGACAATAGGGTGACATCGATGGCGGTGCAGTGCGACATCTCTAATGCAACGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26607.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis