Browse Element(s) Details


OsAffx.14419.1.S1_at

Description tigr:9632.m05337
TID=OsAffx.14419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5490011/11bHLH family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative
LOC_Os04g54910NANA4+32447360..32447797hypothetical protein
LOC_Os04g54920OsAffx.26607.3.S1_at10/114+32448815..32449959hypothetical protein
LOC_Os04g54920Os.36476.1.S1_at1/114+32448815..32449959hypothetical protein
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14419.1.S1_at--681--5851Chr04:32439053..32439077 (25 bp)
GAGCCGGGAGCTCGGTGCCGTCGTC
LOC_Os04g54900
OsAffx.14419.1.S1_at--1137--951Chr04:32439015..32439039 (25 bp)
AGGACGTCGATCTCGGAGGACCAGA
LOC_Os04g54900
OsAffx.14419.1.S1_at--851--4031Chr04:32439008..32439032 (25 bp)
CGATCTCGGAGGACCAGATCGCCGA
LOC_Os04g54900
OsAffx.14419.1.S1_at--676--9091Chr04:32438960..32438984 (25 bp)
TGCTCCCGGAGTCTCAGGCTCGCAA
LOC_Os04g54900
OsAffx.14419.1.S1_at--760--9311Chr04:32438957..32438981 (25 bp)
TCCCGGAGTCTCAGGCTCGCAATGG
LOC_Os04g54900
OsAffx.14419.1.S1_at--685--8031Chr04:32438953..32438977 (25 bp)
GGAGTCTCAGGCTCGCAATGGCGCC
LOC_Os04g54900
OsAffx.14419.1.S1_at--723--3751Chr04:32438948..32438972 (25 bp)
CTCAGGCTCGCAATGGCGCCCATAG
LOC_Os04g54900
OsAffx.14419.1.S1_at--694--8351Chr04:32438817..32438841 (25 bp)
GGCGGCGAGGGTTTTGCAGGAGACG
LOC_Os04g54900
OsAffx.14419.1.S1_at--554--1051Chr04:32438764..32438788 (25 bp)
AGGTGGACAACCTCAGCGAGACGCT
LOC_Os04g54900
OsAffx.14419.1.S1_at--911--7511Chr04:32438762..32438786 (25 bp)
GTGGACAACCTCAGCGAGACGCTCG
LOC_Os04g54900
OsAffx.14419.1.S1_at--1036--4611Chr04:32438749..32438773 (25 bp)
GCGAGACGCTCGCTCAGCTGCTCGC
LOC_Os04g54900
Target Sequence 
GAGCCGGGAGCTCGGTGCCGTCGTCGTCGTCGTCGTCGAGGACGTCGATCTCGGAGGACCAGATCGCCGAGCTTCTCTCC
AAGCTTCAGGCCCTGCTCCCGGAGTCTCAGGCTCGCAATGGCGCCCATAGGGGCTCGGCGGCGAGGGTTTTGCAGGAGAC
GTGCAGCTACATCAGGAGCCTGCACCAGGAGGTGGACAACCTCAGCGAGACGCTCGCTCAGCTGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis