Browse Element(s) Details


Os.53282.1.S1_at

Description gb:AK071780.1
DB_XREF= gi:32981803
TID=Os.53282.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114E02, full insert sequence.
FL= gb:AK071780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5486011/11Glutaredoxin family protein, expressed
LOC_Os03g090901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53282.1.S1_at--17--4171Chr04:32414473..32414497 (25 bp)
CGCCGGTGCGCAAGCTCGGGTACAT
LOC_Os04g54860
Os.53282.1.S1_at--1027--5751Chr04:32414543..32414567 (25 bp)
GACGTGCTACGGCAGCTGCAAGATA
LOC_Os04g54860
Os.53282.1.S1_at--713--3831Chr04:32414558..32414582 (25 bp)
CTGCAAGATATTCGTCGACGACGAT
LOC_Os04g54860
Os.53282.1.S1_at--264--5291Chr04:32414624..32414648 (25 bp)
GAATGGCCTTATCAGATGCCCTGTC
LOC_Os04g54860
Os.53282.1.S1_at--184--3831Chr04:32414654..32414678 (25 bp)
CTGCTGATGCTTCTTGTACCGTAGA
LOC_Os04g54860
Os.53282.1.S1_at--676--6691Chr04:32414669..32414693 (25 bp)
GTACCGTAGATTAAAATCGGCCATG
LOC_Os04g54860
Os.53282.1.S1_at--282--491Chr04:32414684..32414708 (25 bp)
ATCGGCCATGTGTTTAGTCGTTTGT
LOC_Os04g54860
Os.53282.1.S1_at--268--6552Chr04:32414766..32414790 (25 bp)
GATTTTGCTTAGATCCTATTATTTC
LOC_Os04g54860
Os.53282.1.S1_at--959--9551Chr04:32414795..32414819 (25 bp)
TCTTTTTGCCCCTCATATAGATTGA
LOC_Os04g54860
Os.53282.1.S1_at--915--7531Chr04:32414827..32414851 (25 bp)
GGGCTCAACCTGTAAAAGGCCTCAT
LOC_Os04g54860
Os.53282.1.S1_at--868--2431Chr04:32414840..32414864 (25 bp)
AAAAGGCCTCATCTGGATTGGAATG
LOC_Os04g54860
Target Sequence 
CGCCGGTGCGCAAGCTCGGGTACATGGAGGCGTGCGCCGCATGCGGCGACGTCCGGTTCGTCCCGTGCGAGACGTGCTAC
GGCAGCTGCAAGATATTCGTCGACGACGATGTCGACGCCGGCGAGTTCCGGCGATGCCCCGATTGCAACGAGAATGGCCT
TATCAGATGCCCTGTCTGCTGCTGCTGATGCTTCTTGTACCGTAGATTAAAATCGGCCATGTGTTTAGTCGTTTGTACTT
TGTACAGTGTGAGGAGCATTGATATTCAGAGGAAATCTATACAGATTCAAGAGGATTTTGCTTAGATCCTATTATTTCTT
TTTCTTTTTGCCCCTCATATAGATTGAAGAGAGGGGGCTCAACCTGTAAAAGGCCTCATCTGGATTGGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis