Browse Element(s) Details


Os.37660.1.S1_at

Description gb:AK062620.1
DB_XREF= gi:32972638
TID=Os.37660.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B07, full insert sequence.
FL= gb:AK059892.1 gb:AK109401.2 gb:AK062620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5487011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37660.1.S1_at--850--6771Chr04:32417315..32417339 (25 bp)
GTTACTAACCTGTCAAGCAGGGCAT
LOC_Os04g54870
Os.37660.1.S1_at--121--5031Chr04:32417299..32417323 (25 bp)
GCAGGGCATCTGAAAGTGATCTTCA
LOC_Os04g54870
Os.37660.1.S1_at--166--2871Chr04:32417286..32417310 (25 bp)
AAGTGATCTTCATGAGTTCTTTTCA
LOC_Os04g54870
Os.37660.1.S1_at--315--1231Chr04:32417272..32417296 (25 bp)
AGTTCTTTTCATTCTCTGGAGCGAT
LOC_Os04g54870
Os.37660.1.S1_at--780--7891Chr04:32416874..32416898 (25 bp)
GGTTCTACTGCTTATGTGACATTCA
LOC_Os04g54870
Os.37660.1.S1_at--461--8151Chr04:32416848..32416872 (25 bp)
GGAACCCTATTCCTTGGAAACTGCA
LOC_Os04g54870
Os.37660.1.S1_at--511--4851Chr04:32416003..32416027 (25 bp)
GCTACTATTGTGGATCAGCCAGTTT
LOC_Os04g54870
Os.37660.1.S1_at--63--6451Chr04:32415991..32416015 (25 bp)
GATCAGCCAGTTTGTATAGCTCGCT
LOC_Os04g54870
Os.37660.1.S1_at--228--7631Chr04:32415965..32415989 (25 bp)
GGGACAGCCTAATGAACCATACAAT
LOC_Os04g54870
Os.37660.1.S1_at--974--6731Chr04:32415725..32415749 (25 bp)
GTTCAATTCCACTCCACAAGAAGCT
LOC_Os04g54870
Os.37660.1.S1_at--484--1451Chr04:32415707..32415731 (25 bp)
AGAAGCTTTGACGATTGCTCAGGAT
LOC_Os04g54870
Target Sequence 
GTTACTAACCTGTCAAGCAGGGCATCTGAAAGTGATCTTCATGAGTTCTTTTCATTCTCTGGAGCGATTGAGCATATAGA
ACTTATCAGATCAGGAGAATATGGTTCTACTGCTTATGTGACATTCAAGGAACCCTATTCCTTGGAAACTGCAGTATTGC
TCAGTGGGGCTACTATTGTGGATCAGCCAGTTTGTATAGCTCGCTGGGGACAGCCTAATGAACCATACAATTTCTGGGAC
ACACCAAATTGGTATACAGAGGAGGAAATTGAATACAGGACCTATCAAACATNGCCAGTTCAATTCCACTCCACAAGAAG
CTTTGACGATTGCTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis