Browse Element(s) Details


Os.37660.1.S2_at

Description gb:AK059892.1
DB_XREF= gi:32969910
TID=Os.37660.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.37660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D10, full insert sequence.
FL= gb:AK059892.1 gb:AK109401.2 gb:AK062620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5487011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed
LOC_Os04g54850Os.351.1.S1_at10/114+32406740..32410067Pectinesterase family protein, expressed
LOC_Os04g54860Os.53282.1.S1_at11/114+32413212..32414887Glutaredoxin family protein, expressed
LOC_Os04g54870Os.37660.1.S2_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54870Os.37660.1.S1_at11/114+32414803..32418746RNA recognition motif family protein, expressed
LOC_Os04g54880Os.45774.1.S1_at11/114+32424435..32428388transposon protein, putative, unclassified
LOC_Os04g54890OsAffx.31018.2.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890OsAffx.31018.3.S1_x_at11/114+32429114..32433661hypothetical protein
LOC_Os04g54890Os.50578.1.S1_x_at5/114+32429114..32433661hypothetical protein
LOC_Os04g54900OsAffx.14419.1.S1_at11/114+32438694..32439108bHLH family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37660.1.S2_at--883--1651Chr04:32415511..32415535 (25 bp)
AGCGCCGGTGTTGGTGCAATCAGAT
LOC_Os04g54870
Os.37660.1.S2_at--379--5991Chr04:32415478..32415502 (25 bp)
GAGACATACCACGTATCCGAGACGA
LOC_Os04g54870
Os.37660.1.S2_at--508--5851Chr04:32415395..32415419 (25 bp)
GACCAGCAGCTATTTCTCTGCAGGA
LOC_Os04g54870
Os.37660.1.S2_at--388--1571Chr04:32415371..32415395 (25 bp)
AGCTATGATGCTGTCTGATGCTCTC
LOC_Os04g54870
Os.37660.1.S2_at--139--8871Chr04:32415356..32415380 (25 bp)
TGATGCTCTCCATAGGGCAGCACAG
LOC_Os04g54870
Os.37660.1.S2_at--1158--8311Chr04:32415317..32415341 (25 bp)
GGCTGCTCATGGTAGACACAATTAA
LOC_Os04g54870
Os.37660.1.S2_at--927--6391Chr04:32415104..32415128 (25 bp)
GATCGTGCAGTCATGTTTAACAGTT
LOC_Os04g54870
Os.37660.1.S2_at--839--2131Chr04:32415085..32415109 (25 bp)
ACAGTTTCTGCTCGTTTTATATTCA
LOC_Os04g54870
Os.37660.1.S2_at--395--4751Chr04:32415059..32415083 (25 bp)
GCTGATAGCATCCTTCATTCTTATT
LOC_Os04g54870
Os.37660.1.S2_at--250--891Chr04:32415029..32415053 (25 bp)
AGGCCTTATCCTGCAGAACTATTGA
LOC_Os04g54870
Os.37660.1.S2_at--981--5471Chr04:32415014..32415038 (25 bp)
GAACTATTGATCTTCCCACGTCGAA
LOC_Os04g54870
Target Sequence 
AGCGCCGGTGTTGGTGCAATCAGATCGGTGGATGAGACATACCACGTATCCGAGACGACCAAGACCGTCGCCACCGCCAC
AGGAAGAACAGCAGTTAAGGTTGTGAATGGCATCATGACCAGCAGCTATTTCTCTGCAGGAGCTATGATGCTGTCTGATG
CTCTCCATAGGGCAGCACAGGCAGCAGCTGATTTGGCTGCTCATGGTAGACACAATTAAGTGAAAATAAACACCCGGTAC
ATATATTGTCAGTTATTCAGACATCAGGATGAACACCCAAATATGGAGTACTTGACATGATGCCGTTCCAAGTATGATAA
TAACGGTGAAACCGGTAACAACTGTACCTACAAAGACTGAAGGAAATGTGTGCAGAACAATGTAAAGTATTTCAAACCGA
GTCAAGTGATCGTGCAGTCATGTTTAACAGTTTCTGCTCGTTTTATATTCATGCTGATAGCATCCTTCATTCTTATTCTT
TTAGGCCTTATCCTGCAGAACTATTGATCTTCCCACGTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37660.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis