Browse Element(s) Details


Os.8957.2.S1_x_at

Description gb:NM_190614.1
DB_XREF= gi:34908311
GEN=P0529H11.3
TID=Os.8957.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.3 (P0529H11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0529H11.3 (P0529H11.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6306011/11phosphatidic acid phosphatase, putative, expressed
LOC_Os09g326901/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein
LOC_Os01g63050Os.25308.1.A1_at6/111+36854891..36856690expressed protein
LOC_Os01g63050OsAffx.28148.1.S1_x_at2/111+36854891..36856690expressed protein
LOC_Os01g63060Os.8957.1.S1_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.2.S1_x_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.1.S1_a_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63080Os.45173.1.S1_x_at1/111+36875130..36883040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_x_at3/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_at2/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.3.S1_x_at1/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63100NANA1+36891035..36896658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8957.2.S1_x_at--562--4711Chr01:36870127..36870239 (25 bp)
GCTGGCCTTTTTAGTTGCTTCACAA
LOC_Os01g63060
Os.8957.2.S1_x_at--903--10211Chr01:36870251..36870275 (25 bp)
TATTACTTTCTATTCCACTCAGCTC
LOC_Os01g63060
Os.8957.2.S1_x_at--77--1591Chr01:36870271..36870295 (25 bp)
AGCTCCCAGGTCCAAATTATCACTG
LOC_Os01g63060
Os.8957.2.S1_x_at--815--2231Chr01:36870284..36870409 (25 bp)
AAATTATCACTGTCGGGAGGGCTCA
LOC_Os01g63060
Os.8957.2.S1_x_at--1142--7571Chr01:36870403..36870427 (25 bp)
GGGCTCAAAAATGGCCACTCTTCCA
LOC_Os01g63060
Os.8957.2.S1_x_at--82--7011Chr01:36870440..36870464 (25 bp)
GTACTTGAAGTGCTCCTGATCAACT
LOC_Os01g63060
Os.8957.2.S1_x_at--514--6451Chr01:36870457..36870566 (25 bp)
GATCAACTTTCCTCGTGGAGTGCTT
LOC_Os01g63060
Os.8957.2.S1_x_at--956--6411Chr01:36870602..36870626 (25 bp)
GATCTTTACACTTGTTTTCGTGCGT
LOC_Os01g63060
Os.8957.2.S1_x_at--979--10492Chr01:36870818..36870842 (25 bp)
TTAAGATTCTTGCTTGGCTGATGGC
LOC_Os01g63060
Os.8957.2.S1_x_at--139--3111Chr01:36871017..36871162 (25 bp)
CAATAAGCTACCAGTTACAGCGAAA
LOC_Os01g63060
Os.8957.2.S1_x_at--1039--8711Chr01:36871255..36871516 (25 bp)
TGTCGATTCTACTGATCGGCGGCAA
LOC_Os01g63060
Target Sequence 
GCTGGCCTTTTTAGTTGCTTCACAATTTTTGCGGATTATTACTTTCTATTCCACTCAGCTCCCAGGTCCAAATTATCACT
GTCGGGAGGGCTCAAAAATGGCCACTCTTCCACCGNCCCATAATGTACTTGAAGTGCTCCTGATCAACTTTCCTCGTGGA
GTGCTTTTTNGGTTGTGGCGATCTGATTTTNTCATCTCACATGATCTTTACACTTGTTTTCGTGCGTACATATCATAAAT
ATGGATCCAAAAGGTTGATTAAGATTCTTGCTTGGCTGATGGCTATAATTCAGAGTCTTCTTATAATTGCTTCTCGAAAA
CACTACAGCGTGGATGTTGTTGTTGCTTGGTATACTGTCAATTTGGTTGTATTCTTTATTGACAATAAGCTACCAGTTAC
AGCGAAAGATAAAGATGGCAGAACAAAGGAAGAGCTCCATAAACTAGAGAAGGATTGCAAGATGAAGGAAGAGTTCCATA
AATTGTTAAATGGAAACACTGTCGATTCTACTGATCGGCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8957.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis