Browse Element(s) Details


Os.8957.1.S1_a_at

Description gb:AK071523.1
DB_XREF= gi:32981546
TID=Os.8957.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.3 (P0529H11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100N13, full insert sequence.
FL= gb:AK071523.1 gb:AK099114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6306011/11phosphatidic acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein
LOC_Os01g63050Os.25308.1.A1_at6/111+36854891..36856690expressed protein
LOC_Os01g63050OsAffx.28148.1.S1_x_at2/111+36854891..36856690expressed protein
LOC_Os01g63060Os.8957.1.S1_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.2.S1_x_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.1.S1_a_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63080Os.45173.1.S1_x_at1/111+36875130..36883040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_x_at3/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_at2/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.3.S1_x_at1/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63100NANA1+36891035..36896658retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8957.1.S1_a_at--81--2971Chr01:36871244..36871268 (25 bp)
AATGGAAACACTGTCGATTCTACTG
LOC_Os01g63060
Os.8957.1.S1_a_at--1149--8151Chr01:36871247..36871271 (25 bp)
GGAAACACTGTCGATTCTACTGATC
LOC_Os01g63060
Os.8957.1.S1_a_at--830--2471Chr01:36871250..36871273 (24 bp)
AACACTGTCGATTCTACTGATCGGC
LOC_Os01g63060
Os.8957.1.S1_a_at--1125--1951Chr01:36871253..36871273 (21 bp)
ACTGTCGATTCTACTGATCGGCGGC
LOC_Os01g63060
Os.8957.1.S1_a_at--617--7211Chr01:36871256..36871517 (25 bp)
GTCGATTCTACTGATCGGCGGCAAC
LOC_Os01g63060
Os.8957.1.S1_a_at--796--491Chr01:36871510..36871530 (21 bp)
ATCGGCGGCAACGTGTGCAGATGAA
LOC_Os01g63060
Os.8957.1.S1_a_at--750--2571Chr01:36871515..36871539 (25 bp)
AACGTGTGCAGATGAACGGAAAACA
LOC_Os01g63060
Os.8957.1.S1_a_at--649--2571Chr01:36871529..36871553 (25 bp)
AACGGAAAACATGGCGAGGACATCA
LOC_Os01g63060
Os.8957.1.S1_a_at--1061--2411Chr01:36871534..36871558 (25 bp)
AAAACATGGCGAGGACATCAACCAC
LOC_Os01g63060
Os.8957.1.S1_a_at--257--371Chr01:36871550..36871574 (25 bp)
ATCAACCACACACTCTCAGATGCCA
LOC_Os01g63060
Os.8957.1.S1_a_at--928--3731Chr01:36871564..36871588 (25 bp)
CTCAGATGCCACTCCCAATGGCACA
LOC_Os01g63060
Target Sequence 
AATGGAAACACTGTCGATTCTACTGATCGGCGGCAACGTGTGCAGATGAACGGAAAACATGGCGAGGACATCAACCACAC
ACTCTCAGATGCCACTCCCAATGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8957.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis