Browse Element(s) Details


Os.54668.1.S1_at

Description gb:AK106427.1
DB_XREF= gi:32991636
TID=Os.54668.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B10, full insert sequence.
FL= gb:AK106427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g219309/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54668.1.S1_at--320--7751Chr12:12348121..12348145 (25 bp)
GGTGTACTGTGCCTTTGTCTGTGCC
LOC_Os12g21930
Os.54668.1.S1_at--231--211Chr12:12348223..12348247 (25 bp)
ATATTTTCCTTATCTTTACACAGTG
LOC_Os12g21930
Os.54668.1.S1_at--75--6551Chr12:12348254..12348278 (25 bp)
GATTTTTCATCTCTGTTCATTGCAA
LOC_Os12g21930
Os.54668.1.S1_at--784--6271Chr12:12349295..12349319 (25 bp)
GATGTCAGATATGTCCTTCCAGCAG
LOC_Os12g21930
Os.54668.1.S1_at--35--1571Chr12:12349318..12349342 (25 bp)
AGCTAGCAGTTTCATATCCGTCACA
LOC_Os12g21930
Os.54668.1.S1_at--518--7091Chr12:12349337..12349361 (25 bp)
GTCACACAGTGACACGATCCGAGAT
LOC_Os12g21930
Os.54668.1.S1_at--15--3531Chr12:12349427..12349451 (25 bp)
CATGACGATGATTTTCTGCTCCACT
LOC_Os12g21930
Os.54668.1.S1_at--179--8271Chr12:12349492..12349516 (25 bp)
GGCAGTTTGCAGTTCATACAGTAGA
LOC_Os12g21930
Os.54668.1.S1_at--243--7491Chr12:12349630..12349653 (24 bp)
GTGGGAAATCAAACCTCGCTTTGAG
LOC_Os12g21930
Os.54668.1.S1_at--959--5331NONE
GAAGTATTGGGTCCTTCGCTTTTGA
NONE
Os.54668.1.S1_at--107--6451NONE
GATCAGGTTCCAGGTTCTTGAGTTT
NONE
Target Sequence 
GGTGTACTGTGCCTTTGTCTGTGCCNATGAGAAGGCTGAGGATTATGAGATGGCAGAGAAGTTGAGGAAAGAATTGTCGG
TGATAAGCATTCAGGATGGATGATATTTTCCTTATCTTTACACAGTGATGCATGATTTTTCATCTCTGTTCATTGCAATG
AAAAAGTCTGGTNNNNTTCNTNTNNTCCATTGCAATAGGCCCATTAAACTGTGATGTCAGATATGTCCTTCCAGCAGCTA
GCAGTTTCATATCCGTCACACAGTGACACGATCCGAGATGCAACTGTTTGTTGTAATTATGTGGTTGACTTGAAGTTAGT
ATTTGTGGGACACCAACCACAATCCATGACGATGATTTTCTGCTCCACTATCAAGAGAGTGATATAGAAGAAGTATGGTC
AAAGTGGATGGCAGTTTGCAGTTCATACAGTAGATCAGCAGTATGATTTGTTACTGAAATGCACATTTACTGGTGGGAAA
TCAAACCTCGCTTTGAGTTTGAAGTATTGGGTCCTTCGCTTTTGAAGGTCTAAGATAAGTCGCTTAGCTNCGTCGGGATG
AAGATCAGGTTCCAGGTTCTTGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis