Browse Element(s) Details


Os.17137.1.S1_at

Description gb:AK119778.1
DB_XREF= gi:37989401
TID=Os.17137.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-H12, full insert sequence.
FL= gb:AK119778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2187011/11intron maturase, type II family protein, putative, expressed
LOC_Os12g218901/11PTEN, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0006499biological_processN-terminal protein myristoylation
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17137.1.S1_at--859--7431Chr12:12313549..12313573 (25 bp)
GTGTATCAATGGTACATTAGGCTTA
LOC_Os12g21870
Os.17137.1.S1_at--736--7951Chr12:12313501..12313525 (25 bp)
GGATAAACCGTCTTAGACAGCCTTT
LOC_Os12g21870
Os.17137.1.S1_at--395--9691Chr12:12313462..12313486 (25 bp)
TACTCATGGATGGTATATCAACAAC
LOC_Os12g21870
Os.17137.1.S1_at--344--4831Chr12:12313432..12313456 (25 bp)
GCTAAAGATATCTATCGTCTAGGAG
LOC_Os12g21870
Os.17137.1.S1_at--415--9411Chr12:12313418..12313442 (25 bp)
TCGTCTAGGAGATATTCTATTGTGC
LOC_Os12g21870
Os.17137.1.S1_at--531--6811Chr12:12313322..12313346 (25 bp)
GTTTTACTCTTAGAAGCATGACACA
LOC_Os12g21870
Os.17137.1.S1_at--864--6651Chr12:12313271..12313295 (25 bp)
GTTGACAAATCAGGTGTTGCACGTT
LOC_Os12g21870
Os.17137.1.S1_at--152--1051Chr12:12313260..12313284 (25 bp)
AGGTGTTGCACGTTAGTAAATAGCG
LOC_Os12g21870
Os.17137.1.S1_at--62--9011Chr12:12313228..12313252 (25 bp)
TGAAGTGTGCACTCATATTCTCTGT
LOC_Os12g21870
Os.17137.1.S1_at--482--9011Chr12:12313221..12313245 (25 bp)
TGCACTCATATTCTCTGTAACCAGG
LOC_Os12g21870
Os.17137.1.S1_at--682--2632Chr12:12313203..12313227 (25 bp)
AACCAGGAGTTATTGCAATTAGGCA
LOC_Os12g21870
Target Sequence 
GTGTATCAATGGTACATTAGGCTTATGTTTTGTGAAGAAAGTTTTATTGGATAAACCGTCTTAGACAGCCTTTTTTTCAA
TAGAGAATACTCATGGATGGTATATCAACAACACATAGCTAAAGATATCTATCGTCTAGGAGATATTCTATTGTGCNAGG
GTATACTTTTAATTGTATACAATGAATAATGACCATATCTCACNGNTAAATTCATCCTTTTCAATTTTGTTTTACTCTTA
GAAGCATGACACACTAATTTGCTTTTTTTTTTTGTTTTAGTTGACAAATCAGGTGTTGCACGTTAGTAAATAGCGTAGAA
ACTGAAGTGTGCACTCATATTCTCTGTAACCAGGAGTTATTGCAATTAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis