Browse Element(s) Details


Os.53191.1.S1_at

Description gb:AK071284.1
DB_XREF= gi:32981307
TID=Os.53191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083P09, full insert sequence.
FL= gb:AK071284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g083701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g218601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08350OsAffx.15729.1.S1_x_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08350OsAffx.21845.1.S1_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08360OsAffx.29763.1.S1_at10/119+4328027..4331178hypothetical protein
LOC_Os09g08370Os.53191.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08370OsAffx.4040.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08379NANA9+4347090..4347513hypothetical protein
LOC_Os09g08390Os.12140.1.S1_a_at11/119+4348564..4354179CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g08400OsAffx.6205.1.S1_at11/119+4358015..4359123hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53191.1.S1_at--952--791Chr04:617910..617934 (25 bp)
ATGTGGCTCCTGACAAGTATATTGT
NONE
Os.53191.1.S1_at--541--1191Chr04:617895..617919 (25 bp)
AGTATATTGTGCCATTGCTCCCTTC
NONE
Os.53191.1.S1_at--131--491Chr04:617774..617798 (25 bp)
ATCGGGCTTCGGAGTGGCCAAACTC
NONE
Os.53191.1.S1_at--582--3271Chr04:617756..617780 (25 bp)
CAAACTCGGAGTGGCCAAACTGGCG
NONE
Os.53191.1.S1_at--610--691Chr04:617575..617599 (25 bp)
ATGAGGTAAGCTGCGTCGACGGATT
NONE
Os.53191.1.S1_at--472--9371Chr04:617560..617584 (25 bp)
TCGACGGATTCATGTTGCTGCTGGT
NONE
Os.53191.1.S1_at--66--9071Chr04:617514..617538 (25 bp)
TGCTTGACGTTGCTATGGGTTCTTT
NONE
Os.53191.1.S1_at--728--7913Chr12:12304078..12304102 (25 bp)
GGTTGTTTGCCCTTGACAAACCACG
LOC_Os12g21860
Os.53191.1.S1_at--164--691Chr04:617426..617450 (25 bp)
ATGACTGTCTCGGAACTCGGATCAC
NONE
Os.53191.1.S1_at--61--6891Chr04:617392..617416 (25 bp)
GTATTTTCCCAATTCGGTTCTGTCA
NONE
Os.53191.1.S1_at--739--3652Chr05:12764523..12764581 (25 bp)
CTATTACTGATTCTTCCCTTTTGGA
NONE
Target Sequence 
ATGTGGCTCCTGACAAGTATATTGTGCCATTGCTCCCTTCGAGCTCGATGGTATGCCTTTAGGGTTTTGTTTTTGGGACA
AATGGTTAGGCAGGATTGCTGGCGCCTCGCCTCGTCTTCCCATCCAATCCAGCCAGATCGGGCTTCGGAGTGGCCAAACT
CGGAGTGGCCAAACTGGCGGTGCGTGAGAGAGGAAGGCGAGGGAAGGATTGGAGGTGGATGAGGTAAGCTGCGTCGACGG
ATTCATGTTGCTGCTGGTTGCTCCAACAGTTAAAGCTGGTGCTTGACGTTGCTATGGGTTCTTTTGGTTTAGATAATTTG
TGTGCTGAATTTTTAGCTTTGGTTGTTTGCCCTTGACAAACCACGGCATGACTGTCTCGGAACTCGGATCACAGTAGAAT
TGTATTTTCCCAATTCGGTTCTGTCACATTCAAAAAATAAAAGATAGGTCAGTCTATTGAATGCACCATGGGGATCAAGT
GAACTGTACTAGATTAGGAGTTTTCTATGACTTTGTTTCGTTGATAATGAGGATTTCTATTACTGATTCTTCCCTTTTGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis