Browse Element(s) Details


OsAffx.4040.1.S1_at

Description tigr:9632.m03878
TID=OsAffx.4040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4080011/11F-box domain containing protein
LOC_Os09g083701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4040.1.S1_at--686--9831Chr04:23988191..23988215 (25 bp)
TAAAGGCACAACTCGGGACAAGAAT
LOC_Os04g40800
OsAffx.4040.1.S1_at--1107--891Chr04:23988251..23988275 (25 bp)
AGGCGCACTGCATCTGGATTTTGAA
LOC_Os04g40800
OsAffx.4040.1.S1_at--505--2091Chr04:23988387..23988411 (25 bp)
ACATCCGAAACTATTGGCTCCTGTG
LOC_Os04g40800
OsAffx.4040.1.S1_at--283--8331Chr04:23988402..23988426 (25 bp)
GGCTCCTGTGTTGCGGAATCTGCAG
LOC_Os04g40800
OsAffx.4040.1.S1_at--347--4871Chr04:23988430..23988454 (25 bp)
GCTAGTCTTACTTGCATTCATGAAG
LOC_Os04g40800
OsAffx.4040.1.S1_at--1100--5351Chr04:23988451..23988475 (25 bp)
GAAGAGTGCAACCTTACTTGGATAT
LOC_Os04g40800
OsAffx.4040.1.S1_at--701--2691Chr04:23988488..23988512 (25 bp)
AAGCTGCGCCTCTATTGGAAACCAT
LOC_Os04g40800
OsAffx.4040.1.S1_at--463--5772Chr12:17696054..17696078 (25 bp)
GACGTTTATAGCTTCCATGCGCAAG
NONE
OsAffx.4040.1.S1_at--962--2132Chr12:17696125..17696149 (25 bp)
ACAGTTGATGACGTTTGCAAGCCAA
NONE
OsAffx.4040.1.S1_at--450--10134Chr12:17696210..17696234 (25 bp)
TATGCAGTTACTTTGTTCCTATTTT
NONE
OsAffx.4040.1.S1_at--361--6593Chr12:17696485..17696785 (25 bp)
GATTGCCATGCAAATATCACCGAAA
NONE
Target Sequence 
TAAAGGCACAACTCGGGACAAGAATATCAAGCTAAGTGAGTTTCTTGGTAATGCGGCTATAGGCGCACTGCATCTGGATT
TTGAATGTGGAAGGATTTGGATTCAACCGGAACATCCGAAACTATTGGCTCCTGTGTTGCGGAATCTGCAGATTGCTAGT
CTTACTTGCATTCATGAAGAGTGCAACCTTACTTGGATATTTTTTCTTTTAGAAGCTGCGCCTCTATTGGAAACCATGCA
CATAAAGATGTGGGACCATGAATGCAAAACGAGTGAGGATGAGGAACTATACCAAAAGGAAGGGACGTTTATAGCTTCCA
TGCGCAAGAATATAATGCATAAAAATTGGAGGAAAGATAGCAGAAAGGTCGTATGCACAGTTGATGACGTTTGCAAGCCA
ATATTTATCACGAATATCATTGACACTCGTAAAAATATAGAACTCCAACCATTTGAAAATATATGCAGTTACTTTGTTCC
TATTTTTAATTATGTCATGCAAACATCACCAAAGATTGCCATGCAAATATCACCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis