Browse Element(s) Details


OsAffx.4039.1.S1_at

Description tigr:9632.m03877
TID=OsAffx.4039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g407907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4039.1.S1_at--284--5131Chr04:23985535..23985559 (25 bp)
GCACACGTGCAGTCCTCACTGCTGT
LOC_Os04g40790
OsAffx.4039.1.S1_at--1158--1891Chr04:23985531..23985555 (25 bp)
ACGTGCAGTCCTCACTGCTGTCTGT
LOC_Os04g40790
OsAffx.4039.1.S1_at--109--1151Chr04:23985525..23985549 (25 bp)
AGTCCTCACTGCTGTCTGTCGTATG
LOC_Os04g40790
OsAffx.4039.1.S1_at--507--3751Chr04:23985521..23985545 (25 bp)
CTCACTGCTGTCTGTCGTATGCTGT
LOC_Os04g40790
OsAffx.4039.1.S1_at--240--3891NONE
CTGTCTGTCGTATGCTGTGAGCTGA
NONE
OsAffx.4039.1.S1_at--21--8731NONE
TGTCTGTCGTATGCTGTGAGCTGAA
NONE
OsAffx.4039.1.S1_at--151--3891NONE
CTGTCGTATGCTGTGAGCTGAAGGC
NONE
OsAffx.4039.1.S1_at--11--9411NONE
TCGTATGCTGTGAGCTGAAGGCAGT
NONE
OsAffx.4039.1.S1_at--179--1611Chr04:23983372..23983396 (25 bp)
AGCTGAAGGCAGTAGTATCCATGGT
LOC_Os04g40790
OsAffx.4039.1.S1_at--772--5291Chr04:23983368..23983392 (25 bp)
GAAGGCAGTAGTATCCATGGTGACA
LOC_Os04g40790
OsAffx.4039.1.S1_at--696--2931Chr04:23983367..23983391 (25 bp)
AAGGCAGTAGTATCCATGGTGACAG
LOC_Os04g40790
Target Sequence 
GCACACGTGCAGTCCTCACTGCTGTCTGTCGTATGCTGTGAGCTGAAGGCAGTAGTATCCATGGTGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis