Browse Element(s) Details


Os.12839.1.S1_at

Description gb:AK060512.1
DB_XREF= gi:32970530
TID=Os.12839.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E03, full insert sequence.
FL= gb:AK060512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4073010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042335biological_processcuticle biosynthesis
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12839.1.S1_at--459--4411NONE
GCCACCAAGGCGTATGTTGATCAAT
NONE
Os.12839.1.S1_at--586--6651Chr04:23957970..23957994 (25 bp)
GTTGATCAATTCTCGAGATGCCTCT
LOC_Os04g40730
Os.12839.1.S1_at--1115--8471Chr04:23957011..23957035 (25 bp)
TGGCGTCCATCAAGAAGGCGTCCTT
LOC_Os04g40730
Os.12839.1.S1_at--202--7831Chr04:23956936..23956960 (25 bp)
GGTACGAGCCGAGGTGCACGCCCTA
LOC_Os04g40730
Os.12839.1.S1_at--493--2771Chr04:23956790..23956814 (25 bp)
AAGACGCAGTGACGAACCAGCACCA
LOC_Os04g40730
Os.12839.1.S1_at--982--5871Chr04:23956757..23956781 (25 bp)
GAGCGATAGTACTCTCTACTTCTTC
LOC_Os04g40730
Os.12839.1.S1_at--731--5031Chr04:23956726..23956750 (25 bp)
GCAGCTTCCGAAACATTGGGCGTTT
LOC_Os04g40730
Os.12839.1.S1_at--1034--8811Chr04:23956702..23956726 (25 bp)
TGATTTACCCCGTATCTCTGGATTA
LOC_Os04g40730
Os.12839.1.S1_at--182--471Chr04:23956689..23956713 (25 bp)
ATCTCTGGATTAGTTCTTCTCATGA
LOC_Os04g40730
Os.12839.1.S1_at--194--791Chr04:23956592..23956616 (25 bp)
ATGTGACACGAACTCGATCTGGCCT
LOC_Os04g40730
Os.12839.1.S1_at--1092--6391Chr04:23956577..23956601 (25 bp)
GATCTGGCCTGGTTAATAAAGCGCG
LOC_Os04g40730
Target Sequence 
GCCACCAAGGCGTATGTTGATCAATTCTCGAGATGCCTCTATGTTGAGTACAAGAACAAAGGCATCGATGTGCAATGCCA
GGTACCCCTGTACGCGGCGACGAAGATGGCGTCCATCAAGAAGGCGTCCTTCTTCGCGCCGTCGCCGGAGACGTACGCCC
GCGCCGCCGTGCGCTACATCGGGTACGAGCCGAGGTGCACGCCCTACTGGCCGCACGCGGTGCTGTGGTTCCTCATCTCC
GCGTTCCCGGAGCCCATCGTGGACAGGCTCCTCCTCAACATGTCCGTCGGCATCCGCAAGAGGGGCATGGCCAAGGACGC
CAGGAAGAAGACGCAGTGACGAACCAGCACCAAAGAATCTGAGCGATAGTACTCTCTACTTCTTCTCCTCTGCAGCTTCC
GAAACATTGGGCGTTTGATTTACCCCGTATCTCTGGATTAGTTCTTCTCATGAGTAAGGTGATGATGAGCTGATGGTTAA
ACAGTGTGTCTGGTTTGATGTACTAAGATTGAAGAGTTTAAGACCATGTGACACGAACTCGATCTGGCCTGGTTAATAAA
GCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis