Browse Element(s) Details


OsAffx.14221.1.S1_x_at

Description tigr:9632.m03870
TID=OsAffx.14221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=streptococcal hemagglutinin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4072010/11expressed protein
LOC_Os07g457405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14221.1.S1_x_at--783--1411Chr04:23944133..23944157 (25 bp)
AGACAAAGCCCCATGCTGAGAGTAA
LOC_Os04g40720
OsAffx.14221.1.S1_x_at--943--6751Chr04:23944047..23944071 (25 bp)
GTTAAGAGCTTTTCCATGAGCCCAC
LOC_Os04g40720
OsAffx.14221.1.S1_x_at--933--8911Chr04:23944031..23944055 (25 bp)
TGAGCCCACCAGCATCAAGTGACAG
LOC_Os04g40720
OsAffx.14221.1.S1_x_at--958--7591Chr04:23944000..23944024 (25 bp)
GGGCACACCACAAAATAGTCGATTT
LOC_Os04g40720
OsAffx.14221.1.S1_x_at--755--7211Chr04:23943983..23944007 (25 bp)
GTCGATTTCGACTAGCAGCTCGGAA
LOC_Os04g40720
OsAffx.14221.1.S1_x_at--811--912Chr07:27306505..27306529 (25 bp)
AGGCTGCCATTGAAACTTCTTCAGA
LOC_Os07g45740
OsAffx.14221.1.S1_x_at--276--6292Chr07:27306528..27306552 (25 bp)
GATGATGCATCCTCATCAGCTGACT
LOC_Os07g45740
OsAffx.14221.1.S1_x_at--22--1032Chr07:27307084..27307108 (25 bp)
AGGTATTTCATCTGCAGCCCATGAT
LOC_Os07g45740
OsAffx.14221.1.S1_x_at--19--1672Chr07:27307099..27307123 (25 bp)
AGCCCATGATAGTGGCGAGCCTGAT
LOC_Os07g45740
OsAffx.14221.1.S1_x_at--247--851NONE
ATGGCAATGCATCACTATCACAGAA
NONE
OsAffx.14221.1.S1_x_at--140--2672Chr07:27307774..27307798 (25 bp)
AAGCCGTGCAATTGGATGACACCGA
LOC_Os07g45740
Target Sequence 
AGACAAAGCCCCATGCTGAGAGTAAAAATTTTGACAGGTTTAGCAATGGAAAGGCAGATCCAAATTCTAAGTCTATAAGA
AATCTTGTTAAGAGCTTTTCCATGAGCCCACCAGCATCAAGTGACAGCACACAGGGCACACCACAAAATAGTCGATTTCG
ACTAGCAGCTCGGAAAGTTCCAAGAAAAAGGTATGAGCAAACCAGTGGCAAATCCAAAAAAGACAAAGGAACTGGTACAA
TTTTCAATGATGCCAGCAGTGATGGCTCTGATGATGAATTGGGCATCGGAAGTGAAAAGGCTGCCATTGAAACTTCTTCA
GATGATGCATCCTCATCAGCTGACTCAGGTATTTCATCTGCAGCCCATGATAGTGGCGAGCCTGATGACGATGGCAATGC
ATCACTATCACAGAAATCTCGCAAAGGGGGGCTTGGCTCCATCCTCAGAGGCTCTTGTAGTTACAAGAAGGCAAAGCAGA
AACAAGCCGTGCAATTGGATGACACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14221.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis