Browse Element(s) Details


OsAffx.26409.3.S1_at

Description tigr:9632.m03874
TID=OsAffx.26409.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4076010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26409.3.S1_at--215--4931Chr04:23971004..23971028 (25 bp)
GCTTGAGTGGCTCCCGAAGTTATCG
LOC_Os04g40760
OsAffx.26409.3.S1_at--381--10431Chr04:23971023..23971047 (25 bp)
TTATCGGAGCTGTCGATGTCCGTCT
LOC_Os04g40760
OsAffx.26409.3.S1_at--239--711Chr04:23971038..23971062 (25 bp)
ATGTCCGTCTGGTTTTGGTCGCCGC
LOC_Os04g40760
OsAffx.26409.3.S1_at--768--1191Chr04:23971066..23971090 (25 bp)
AGTATCCGCTGGTGTTTGGCCATGC
LOC_Os04g40760
OsAffx.26409.3.S1_at--65--2011Chr04:23971116..23971140 (25 bp)
ACTCATGCCGGTTTAGTTCATTCCA
LOC_Os04g40760
OsAffx.26409.3.S1_at--1146--6731Chr04:23971131..23971155 (25 bp)
GTTCATTCCAAAGTGCTCCGGTTGA
LOC_Os04g40760
OsAffx.26409.3.S1_at--1074--2552Chr04:23971189..23971213 (25 bp)
AACTGTGGTTGGACTTCGAATGCGA
LOC_Os04g40760
OsAffx.26409.3.S1_at--1102--2831NONE
AAGTAACGGACCATCACTGTGTGCC
NONE
OsAffx.26409.3.S1_at--473--7291Chr04:23971799..23971823 (25 bp)
GTGCCCCTTGAGGAAGAGCTGCTAG
LOC_Os04g40760
OsAffx.26409.3.S1_at--822--411Chr04:23971901..23971925 (25 bp)
ATCATTTATGGCTTTCGACCTGAAA
LOC_Os04g40760
OsAffx.26409.3.S1_at--514--5351Chr04:23972091..23972115 (25 bp)
GAAGAACGTCCCCTATCAAAAGTAT
LOC_Os04g40760
Target Sequence 
GCTTGAGTGGCTCCCGAAGTTATCGGAGCTGTCGATGTCCGTCTGGTTTTGGTCGCCGCGTCAGTATCCGCTGGTGTTTG
GCCATGCTCCTCGGCTCCAGCGGCTAGAGCTAACTCATGCCGGTTTAGTTCATTCCAAAGTGCTCCGGTTGAGCAAGCTA
CTTGACAATTGTACAAGCCTTCGCGAACTGTGGTTGGACTTCGAATGCGAAAAAGTAACGGACCATCACTGTGTGCCCCT
TGAGGAAGAGCTGCTAGAGAGAATGTTCATTTGCGAGAAAAACAATATAAATTGGGAACCATCTAATTTCAAGCACAACA
ATTTGACGAAGCTCATCATTTATGGCTTTCGACCTGAAAATAGATTCATGAGCTACATAAGAAGGGTCATGAAGGCAGCA
GTGAATTTGGATGAAATATCATTGCACGATGATAGGTGTGAGATTTGTGAATCTTATTATCCAATTACACGATATCCACA
TACTAAAAAAGAGAGGGATTTGGTAAAGAGAGCTATCAATGAGGGAAGAACGTCCCCTATCAAAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26409.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis