Browse Element(s) Details


OsAffx.26408.1.S1_x_at

Description tigr:9634.m04075
TID=OsAffx.26408.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4221011/11hypothetical protein
LOC_Os04g407509/11hypothetical protein
LOC_Os07g490002/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42180OsAffx.28063.1.S1_at11/116+25321423..25323331hypothetical protein
LOC_Os06g42180OsAffx.24777.1.A1_at1/116+25321423..25323331hypothetical protein
LOC_Os06g42190OsAffx.22492.1.S1_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42190OsAffx.22492.1.S1_x_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.5.S1_x_at5/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.2.S1_x_at4/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42210OsAffx.26408.1.S1_x_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42210OsAffx.26408.1.S1_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42220Os.54075.1.S1_at11/116+25346189..25347650Leucine Rich Repeat family protein, expressed
LOC_Os06g42230OsAffx.31278.1.S1_at4/116+25356471..25358930Transposable element protein, putative, MuDR
LOC_Os06g42240OsAffx.29272.2.S1_x_at11/116+25359859..25362118hypothetical protein
LOC_Os06g42240OsAffx.29272.3.S1_x_at6/116+25359859..25362118hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26408.1.S1_x_at--514--1272Chr04:23969127..23969151 (25 bp)
AGATCATCGGCGACTACCTCATTGA
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--681--1752Chr04:23969142..23969166 (25 bp)
ACCTCATTGAGGCACGGGCTGCTTT
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--239--8892Chr04:23969149..23969173 (25 bp)
TGAGGCACGGGCTGCTTTCGCTGCC
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--613--5272Chr04:23969192..23969216 (25 bp)
GAATGTGGCGACCACTCAGCGGCCA
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--388--4132Chr04:23969223..23969247 (25 bp)
CGCTTGGACTAGTGGAAGCAGTGCT
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--161--10833Chr07:29337469..29337492 (24 bp)
TTGTCGCCGCGCATGGAGGCCGCTC
LOC_Os07g49000
OsAffx.26408.1.S1_x_at--30--9352Chr04:23969325..23969349 (25 bp)
TCGCTGACATGCTCCGCGACTACAT
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--732--633Chr07:29337703..29337724 (22 bp)
ATGCTTCCTCTGCTGCTTCGACATA
LOC_Os07g49000
OsAffx.26408.1.S1_x_at--890--952Chr04:23969473..23969497 (25 bp)
AGGAGCTATGCGTGGACGGCGACCG
LOC_Os04g40750
OsAffx.26408.1.S1_x_at--727--7691Chr06:25344471..25344495 (25 bp)
GGGTCCCACACTGATTTAGCCGCTA
LOC_Os06g42210
OsAffx.26408.1.S1_x_at--258--4371Chr06:25344466..25344490 (25 bp)
CCACACTGATTTAGCCGCTACGTCA
LOC_Os06g42210
Target Sequence 
AGATCATCGGCGACTACCTCATTGAGGCACGGGCTGCTTTCGCTGCCGCCGCGCCGCTCAATGGGGAATGTGGCGACCAC
TCAGCGGCCACGACGGCGCTTGGACTAGTGGAAGCAGTGCTAGAGTTGTCGCCGCGCATGGAGGCCGCTCTCGAGCTCCG
GGCGTGCTCTCTCCTCGCGTTCCGCCGCTACCGCGGCGTCGCTGACATGCTCCGCGACTACATCCCCAGCTGCACCAAGC
CTACATGCTTCCTCTGCTGCTTCGACATATCCAACCTCAAGCACCGCGTCCTCGCCGACGGGGAGGCGGCGGCGCACCGC
AGGCGGTGGGCGCAAGCTGCGGGGGGAGGAGCTATGCGTGGACGGCGACCGNCGGGGAGCCCGTANGCCGCTCCCCCCAC
CGCCGCCGCCATCACCGCCGATGCCCGCCGCCGAGGCACTGCCGGCGGCAGAGAAGGGAGAGAGATGAGGAAGAGAGAGA
AGAGGGGNAAAAGAGAGAGGAGTTTGATGACGTGGCCAGCTGACATGTGGGGCCCACGCGGGTCCCACACTGATTTAGCC
GCTACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26408.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis