Browse Element(s) Details


OsAffx.31278.1.S1_at

Description tigr:9639.m03000
TID=OsAffx.31278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3297011/11SWIM zinc finger family protein
LOC_Os08g191807/11Transposable element protein, putative, MuDR
LOC_Os06g422304/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32950NANA11+18974231..18975112hypothetical protein
LOC_Os11g32960Os.52935.1.S1_at11/1111+18980146..18982722DHHC zinc finger domain containing protein, expressed
LOC_Os11g32970OsAffx.31278.1.S1_at11/1111+18983843..18986605SWIM zinc finger family protein
LOC_Os11g32980OsAffx.29272.2.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32980OsAffx.29272.3.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32990OsAffx.19135.1.S1_at11/1111+18997868..18998298hypothetical protein
LOC_Os11g33000Os.11519.1.S1_a_at9/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.11519.2.S1_x_at6/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.38505.1.S1_x_at1/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33010Os.26886.1.S1_x_at7/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33010Os.26886.3.S1_x_at5/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31278.1.S1_at--1006--1011Chr11:18986087..18986111 (25 bp)
AGGTTTACACATGGAGGGACTTCAA
LOC_Os11g32970
OsAffx.31278.1.S1_at--388--7852Chr12:8673787..8673806 (20 bp)
GGTAGTTTTGCAACCCAACAACACA
NONE
OsAffx.31278.1.S1_at--1162--10253Chr11:18986169..18986193 (25 bp)
TTTGACAGGTGTTCCATGTGCTCAT
LOC_Os11g32970
OsAffx.31278.1.S1_at--1042--773Chr11:18986184..18986208 (25 bp)
ATGTGCTCATGTCTTGGCAGTTTGC
LOC_Os11g32970
OsAffx.31278.1.S1_at--1105--3433Chr11:18986233..18986257 (25 bp)
CAGTTGATCAATCCATTCTACTCTT
LOC_Os11g32970
OsAffx.31278.1.S1_at--430--2732Chr11:18986261..18986285 (25 bp)
AAGCACTTGCTAGTACCTGGGCTAT
LOC_Os11g32970
OsAffx.31278.1.S1_at--89--4271Chr11:18986276..18986300 (25 bp)
CCTGGGCTATACAATTTCTTCCTTA
LOC_Os11g32970
OsAffx.31278.1.S1_at--326--5292Chr11:18986314..18986338 (25 bp)
GAATGGCCACCATTTACTGGTCCAA
LOC_Os11g32970
OsAffx.31278.1.S1_at--833--7272Chr11:18986333..18986357 (25 bp)
GTCCAATAATTGTTCCTGATCCTAG
LOC_Os11g32970
OsAffx.31278.1.S1_at--745--10073Chr11:18986369..18986393 (25 bp)
TAGGCCGTCGTCAGCATAACAGGAT
LOC_Os11g32970
OsAffx.31278.1.S1_at--284--8233Chr11:18986439..18986463 (25 bp)
GGCACACCGTTCCACAAGAGATAGT
LOC_Os11g32970
Target Sequence 
AGGTTTACACATGGAGGGACTTCAAGTATAAGGTAGTTTTGCAACCCAACAACACACCATCTTGTGACTGTCAAAAGCCA
AATTTGACAGGTGTTCCATGTGCTCATGTCTTGGCAGTTTGCAAACATAGAAATCTTAATGAAAATCAGTTGATCAATCC
ATTCTACTCTTCTCAAGCACTTGCTAGTACCTGGGCTATACAATTTCTTCCTTATGGAAATCAAATTGAATGGCCACCAT
TTACTGGTCCAATAATTGTTCCTGATCCTAGACAGATAAATCTAGGCCGTCGTCAGCATAACAGGATACCAATGTACATG
GATGAAATGCAAGGAAGACGACTTGGACACCAGGCACACCGTTCCACAAGAGATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis