Browse Element(s) Details


Os.11519.1.S1_a_at

Description gb:AK108254.1
DB_XREF= gi:32993463
TID=Os.11519.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11519 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for 10 kD prolamin
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A03, full insert sequence.
FL= gb:AK108254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5573011/11expressed protein
LOC_Os11g330009/11prolamin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11519.1.S1_a_at--573--4272Chr11:19007908..19007932 (25 bp)
CCTGTTTGCCTTAATTGCTCTTTCT
LOC_Os11g33000
Os.11519.1.S1_a_at--1012--3872Chr11:19007909..19007933 (25 bp)
CTGTTTGCCTTAATTGCTCTTTCTG
LOC_Os11g33000
Os.11519.1.S1_a_at--830--8772Chr11:19007910..19007934 (25 bp)
TGTTTGCCTTAATTGCTCTTTCTGC
LOC_Os11g33000
Os.11519.1.S1_a_at--540--6852Chr11:19007911..19007935 (25 bp)
GTTTGCCTTAATTGCTCTTTCTGCA
LOC_Os11g33000
Os.11519.1.S1_a_at--1034--9192Chr11:19007938..19007962 (25 bp)
TGCCACTACTGCAATCACCACTATG
LOC_Os11g33000
Os.11519.1.S1_a_at--1006--3312Chr11:19007941..19007965 (25 bp)
CACTACTGCAATCACCACTATGCAG
LOC_Os11g33000
Os.11519.1.S1_a_at--185--2032Chr11:19007942..19007966 (25 bp)
ACTACTGCAATCACCACTATGCAGT
LOC_Os11g33000
Os.11519.1.S1_a_at--262--9912Chr11:19007944..19007968 (25 bp)
TACTGCAATCACCACTATGCAGTAT
LOC_Os11g33000
Os.11519.1.S1_a_at--1040--1972Chr11:19007945..19007969 (25 bp)
ACTGCAATCACCACTATGCAGTATT
LOC_Os11g33000
Os.11519.1.S1_a_at--400--10651Chr03:31668971..31668995 (25 bp)
TTCCCACCAACATTAGCCATGGGCA
LOC_Os03g55730
Os.11519.1.S1_a_at--198--3371Chr03:31668967..31668991 (25 bp)
CACCAACATTAGCCATGGGCACCAT
LOC_Os03g55730
Target Sequence 
CCTGTTTGCCTTAATTGCTCTTTCTGCAAGNTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCC
ATGGGCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11519.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis