Browse Element(s) Details


Os.13536.1.S1_at

Description gb:BI798695
DB_XREF= gi:15850419
DB_XREF=H114B01
CLONE=H114B01
TID=Os.13536.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.13536 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5573411/11prolamin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13536.1.S1_at--296--9871Chr03:31671810..31671834 (25 bp)
TACATGATGCAAACGACGGGCACAG
LOC_Os03g55734
Os.13536.1.S1_at--977--5751Chr03:31671796..31671820 (25 bp)
GACGGGCACAGATAGCTACGCAACA
LOC_Os03g55734
Os.13536.1.S1_at--620--4851Chr03:31671782..31671806 (25 bp)
GCTACGCAACAATGTTCATGCCACA
LOC_Os03g55734
Os.13536.1.S1_at--863--8791Chr03:31671770..31671794 (25 bp)
TGTTCATGCCACAACCAATTGCTCT
LOC_Os03g55734
Os.13536.1.S1_at--814--2131Chr03:31671703..31671727 (25 bp)
ACAGTGCCAGTGTGGGTATGGTACT
LOC_Os03g55734
Os.13536.1.S1_at--129--831Chr03:31671686..31671710 (25 bp)
ATGGTACTAGTTGCCAGATGATACA
LOC_Os03g55734
Os.13536.1.S1_at--1140--7511Chr03:31671638..31671662 (25 bp)
GTGGACTTGGCCAACAACAAATGAT
LOC_Os03g55734
Os.13536.1.S1_at--1082--8371Chr03:31671604..31671628 (25 bp)
GGCGATGCAACTTCCAAACATGTGT
LOC_Os03g55734
Os.13536.1.S1_at--691--2391Chr03:31671589..31671613 (25 bp)
AAACATGTGTAGCATGGCCCCTGCC
LOC_Os03g55734
Os.13536.1.S1_at--609--4811Chr03:31671556..31671580 (25 bp)
GCTCTCTCCCTATGGTTGTTGTTAA
LOC_Os03g55734
Os.13536.1.S1_at--134--3571Chr03:31671492..31671516 (25 bp)
CATACTATCGTGTGCGACTGGCTAG
LOC_Os03g55734
Target Sequence 
TACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTG
TTGCATGCAGCTACAAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAAT
ATGCTATTTGTGGTGGACTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATGTGTAGCATGGCC
CCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCNAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCA
TACTATCGTGTGCGACTGGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis