Browse Element(s) Details


OsAffx.13497.1.S1_s_at

Description tigr:9631.m05436
TID=OsAffx.13497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5570411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55660OsAffx.13495.1.S1_x_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660OsAffx.13495.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660Os.13866.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55670Os.13866.2.S1_at8/113+31633526..31635766expressed protein
LOC_Os03g55680OsAffx.25723.1.S1_at11/113+31636702..31637828hypothetical protein
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13497.1.S1_s_at--971--3611Chr03:31660441..31660465 (25 bp)
CTTGTGGTGCGGCTGGTATATTTCT
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--244--7991Chr03:31660492..31660516 (25 bp)
GGATGCAGCTTTTTTGCTTGTAGAT
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--740--10111Chr03:31660532..31660556 (25 bp)
TATGTGCCACCTAATTATTTTGAGC
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--862--10392Chr06:37912..38258 (25 bp)
TTTTGAGCAGCATCTTTTCCATGTA
NONE
OsAffx.13497.1.S1_s_at--339--10091Chr03:31660651..31660675 (25 bp)
TAGGTGATCAGCCTCTTTTCAGTTC
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--238--10071Chr03:31660681..31660705 (25 bp)
TAGTCCTGTTGAGCTCGACATTGTT
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--949--5671Chr03:31660697..31660721 (25 bp)
GACATTGTTGTCATCAGTCCCAACT
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--1031--3431Chr03:31660711..31660735 (25 bp)
CAGTCCCAACTTCTCTGTACTTTTT
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--740--10371Chr03:31660736..31660760 (25 bp)
TTTTTTGCTTTACTGCTGGCATTAA
LOC_Os03g55704
OsAffx.13497.1.S1_s_at--512--4953Chr05:17697752..17697775 (24 bp)
GCATTAAGCTACCATAGTCCTGCTC
NONE
OsAffx.13497.1.S1_s_at--100--1151Chr03:31660769..31660793 (25 bp)
AGTCCTGCTCTGTCATATCTGTGTA
LOC_Os03g55704
Target Sequence 
CTTGTGGTGCGGCTGGTATATTTCTTCGTTCTTCTTTTTCCCTTTTTTCTAGGATGCAGCTTTTTTGCTTGTAGATTTTG
TTCAAGATTTATATGTGCCACCTAATTATTTTGAGCAGCATCTTTTCCATGTACTCGTTTGTAAAGTGGCTCCATTGGCC
ATGAAGTTAAGCTTGCTTGTATGATTCTTGCAACATGAATAGCATGATGATAGGTGATCAGCCTCTTTTCAGTTCTCCTG
TAGTCCTGTTGAGCTCGACATTGTTGTCATCAGTCCCAACTTCTCTGTACTTTTTTTTTTTGCTTTACTGCTGGCATTAA
GCTACCATAGTCCTGCTCTGTCATATCTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13497.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis