Browse Element(s) Details

OsAffx.4992.1.S1_at

Description

tigr:9634.m03143
TID=OsAffx.4992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33510	11/11	retrotransposon, putative, centromere-specific
LOC_Os03g55704	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33450	OsAffx.4988.1.S1_at	10/11	6	+	19487393..19493211	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33450	OsAffx.2630.1.S1_x_at	1/11	6	+	19487393..19493211	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33460	OsAffx.4989.1.S1_at	11/11	6	+	19494981..19495397	hypothetical protein
LOC_Os06g33470	OsAffx.4990.1.S1_at	11/11	6	+	19499408..19502109	expressed protein
LOC_Os06g33470	OsAffx.24962.1.S1_at	1/11	6	+	19499408..19502109	expressed protein
LOC_Os06g33480	Os.35524.1.S2_at	1/11	6	+	19502410..19505419	CAPIP1, putative
LOC_Os06g33490	OsAffx.4991.1.S1_at	11/11	6	+	19507721..19510237	CAPIP1, putative
LOC_Os06g33499	NA	NA	6	+	19511072..19511723	NA
LOC_Os06g33510	OsAffx.4992.1.S1_at	11/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33510	Os.54774.1.S1_x_at	2/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33510	Os.54774.1.S1_at	2/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33520	OsAffx.27916.1.S1_at	11/11	6	+	19515633..19523705	DEAD box RNA helicase, putative, expressed
LOC_Os06g33530	OsAffx.4993.1.S1_at	11/11	6	+	19525784..19528695	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.15713.1.S1_s_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.46761.1.S1_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.52702.1.S1_at	9/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.1436.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.51348.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.9036.1.S1_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4992.1.S1_at--1078--349	1	Chr06:19513605..19513629 (25 bp)	CATGGATGACTCCACTTGGCTAGAT	LOC_Os06g33510
OsAffx.4992.1.S1_at--638--571	2	Chr06:19513612..19513636 (25 bp)	GACTCCACTTGGCTAGATTTTGTTG	LOC_Os06g33510
OsAffx.4992.1.S1_at--423--67	1	Chr06:19513986..19514010 (25 bp)	ATGAAGCCGCCGAGTATGCACGAGC	LOC_Os06g33510
OsAffx.4992.1.S1_at--686--423	1	Chr06:19513995..19514019 (25 bp)	CCGAGTATGCACGAGCGGTGGCTCA	LOC_Os06g33510
OsAffx.4992.1.S1_at--603--1013	1	Chr06:19514000..19514024 (25 bp)	TATGCACGAGCGGTGGCTCAGGCTA	LOC_Os06g33510
OsAffx.4992.1.S1_at--382--589	1	Chr06:19514007..19514031 (25 bp)	GAGCGGTGGCTCAGGCTACAACTGA	LOC_Os06g33510
OsAffx.4992.1.S1_at--454--771	1	Chr06:19514011..19514035 (25 bp)	GGTGGCTCAGGCTACAACTGAAAAT	LOC_Os06g33510
OsAffx.4992.1.S1_at--1140--243	1	Chr06:19514031..19514055 (25 bp)	AAAATGATGATCAGGCTAGAGGTAC	LOC_Os06g33510
OsAffx.4992.1.S1_at--545--1001	1	Chr06:19514047..19514071 (25 bp)	TAGAGGTACCGATGCCAATGGTGCT	LOC_Os06g33510
OsAffx.4992.1.S1_at--1050--783	1	Chr06:19514051..19514075 (25 bp)	GGTACCGATGCCAATGGTGCTAAAA	LOC_Os06g33510
OsAffx.4992.1.S1_at--699--439	1	Chr06:19514060..19514084 (25 bp)	GCCAATGGTGCTAAAAATGCTAATG	LOC_Os06g33510

Target Sequence

CATGGATGACTCCACTTGGCTAGATTTTGTTGGAAGGGATGAGGATGAAGCCGCCGAGTATGCACGAGCGGTGGCTCAGG
CTACAACTGAAAATGATGATCAGGCTAGAGGTACCGATGCCAATGGTGCTAAAAATGCTAATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis