Browse Element(s) Details


OsAffx.4989.1.S1_at

Description tigr:9634.m03138
TID=OsAffx.4989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3346011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33430NANA6+19466522..19472679retrotransposon protein, putative, unclassified
LOC_Os06g33440OsAffx.19542.3.S1_x_at7/116+19479341..19480863retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g33450OsAffx.4988.1.S1_at10/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33450OsAffx.2630.1.S1_x_at1/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33460OsAffx.4989.1.S1_at11/116+19494981..19495397hypothetical protein
LOC_Os06g33470OsAffx.4990.1.S1_at11/116+19499408..19502109expressed protein
LOC_Os06g33470OsAffx.24962.1.S1_at1/116+19499408..19502109expressed protein
LOC_Os06g33480Os.35524.1.S2_at1/116+19502410..19505419CAPIP1, putative
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4989.1.S1_at--830--4331Chr06:19495341..19495365 (25 bp)
CCATCGCCGACATCCATGCATGGAA
LOC_Os06g33460
OsAffx.4989.1.S1_at--204--651Chr06:19495326..19495350 (25 bp)
ATGCATGGAACCATCTCAGCCCCAG
LOC_Os06g33460
OsAffx.4989.1.S1_at--1130--3851Chr06:19495298..19495322 (25 bp)
CTGTCGCTGTTGCAACCAAATCGGA
LOC_Os06g33460
OsAffx.4989.1.S1_at--798--2251Chr06:19495281..19495305 (25 bp)
AAATCGGACTCCAGTACTCCAGCGG
LOC_Os06g33460
OsAffx.4989.1.S1_at--1006--8331Chr06:19495235..19495259 (25 bp)
GGCTGTACAGAACTCCTGTCCTACG
LOC_Os06g33460
OsAffx.4989.1.S1_at--299--9951Chr06:19495214..19495238 (25 bp)
TACGCTCTGCGTGGTTTGATTTGTC
LOC_Os06g33460
OsAffx.4989.1.S1_at--471--7491Chr06:19495204..19495228 (25 bp)
GTGGTTTGATTTGTCGCTCCGACGA
LOC_Os06g33460
OsAffx.4989.1.S1_at--453--5831Chr06:19495181..19495205 (25 bp)
GACCTCCTCCAATGTGCGGCCGATG
LOC_Os06g33460
OsAffx.4989.1.S1_at--1154--8351Chr06:19495127..19495151 (25 bp)
GGCGTGAGCTCCATACCCAAGGGTG
LOC_Os06g33460
OsAffx.4989.1.S1_at--859--5771Chr06:19495083..19495107 (25 bp)
GACGATGTGCGACATCACAAACTTG
LOC_Os06g33460
OsAffx.4989.1.S1_at--1082--3291Chr06:19495068..19495092 (25 bp)
CACAAACTTGATGCGCACATCAGCG
LOC_Os06g33460
Target Sequence 
CCATCGCCGACATCCATGCATGGAACCATCTCAGCCCCAGCCCCTGTCGCTGTTGCAACCAAATCGGACTCCAGTACTCC
AGCGGCTCTGCCTTGCTGCGCTGCCCGGCTGTACAGAACTCCTGTCCTACGCTCTGCGTGGTTTGATTTGTCGCTCCGAC
GACCTCCTCCAATGTGCGGCCGATGCTGCTGCATCGAGGAGGGAGGCGGCAGGCGGCGTGAGCTCCATACCCAAGGGTGG
GGCTGTAGCGAGGAGGAAGACGATGTGCGACATCACAAACTTGATGCGCACATCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis