Browse Element(s) Details


Os.35524.1.S2_at

Description gb:AK120109.1
DB_XREF= gi:37989732
TID=Os.35524.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.29 (P0039A07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023O17, full insert sequence.
FL= gb:AK064787.1 gb:AK067087.1 gb:AK120109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6513011/11expressed protein
LOC_Os12g396701/11hypothetical protein
LOC_Os06g334801/11CAPIP1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35524.1.S2_at--359--8591Chr01:38133402..38133426 (25 bp)
TGGTAACTCCACCTCTAAACAGTTT
LOC_Os01g65130
Os.35524.1.S2_at--480--9791Chr01:38133417..38133441 (25 bp)
TAAACAGTTTGGTGAACCTTGCCAC
LOC_Os01g65130
Os.35524.1.S2_at--993--2631Chr01:38133431..38133455 (25 bp)
AACCTTGCCACCAACACGATGTTTT
LOC_Os01g65130
Os.35524.1.S2_at--835--431Chr01:38133660..38133684 (25 bp)
ATCTTCTTATCGTTTGACACTCTAC
LOC_Os01g65130
Os.35524.1.S2_at--1137--5611Chr01:38133675..38133699 (25 bp)
GACACTCTACACTGATTACCAATTT
LOC_Os01g65130
Os.35524.1.S2_at--1056--6571Chr01:38133715..38133739 (25 bp)
GATTGCCATTTAGATATGTCTCCTT
LOC_Os01g65130
Os.35524.1.S2_at--157--1271Chr01:38133726..38133750 (25 bp)
AGATATGTCTCCTTTATGATTGGCA
LOC_Os01g65130
Os.35524.1.S2_at--471--271Chr01:38133756..38133780 (25 bp)
ATATGTTTTCGTAGTTCTCTGTCAC
LOC_Os01g65130
Os.35524.1.S2_at--843--4831Chr01:38133807..38133831 (25 bp)
GCTAAGTCAGCATCCTATCTTACTA
LOC_Os01g65130
Os.35524.1.S2_at--401--9777Chr12:24462025..24462079 (25 bp)
TAACGTGCAAAGATACCACATCATC
LOC_Os12g39670
Os.35524.1.S2_at--1062--9811Chr01:38133949..38133973 (25 bp)
TAACAATCATCTTTCATTCATCTCC
LOC_Os01g65130
Target Sequence 
TGGTAACTCCACCTCTAAACAGTTTGGTGAACCTTGCCACCAACACGATGTTTTTAATTTATTAGCAACAGGAAGAAATA
CTAGAAAAGTACTATAGGCTAGAAACTTGGGATAGTGATGTGACTAAAAAAAGTTGAATTCGCCAAAAGGGGAAAAACTG
GATGTAGGAGTATCATGCATGATATTTTGGTGATATTTGCAAAACTAAATTTGTATACAGCTTTCATAAAAAAGATAAAG
TGGTTGCCATTTAGATATATCTTCTTATCGTTTGACACTCTACACTGATTACCAATTTTTTTTCAAAGACAACGATTGCC
ATTTAGATATGTCTCCTTTATGATTGGCATTTAGATATGTTTTCGTAGTTCTCTGTCACAACTAAGAAAACCATTTTTAT
AAGCAGCTAAGTCAGCATCCTATCTTACTATAAAGTTATCCCCTACTAACTCTTTAAACTTAACGTGCAAAGATACCACA
TCATCATCCACTAACAAGATGCCACATCATCATCCACTAATTAACAAGATGCCACATCATCATCCACTAACAATCATCTT
TCATTCATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35524.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis