Browse Element(s) Details


OsAffx.9518.1.S1_x_at

Description gb:NM_190804.1
DB_XREF= gi:34908691
GEN=P0039A07.27
TID=OsAffx.9518.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039A07.27 (P0039A07.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6512011/11POT family protein
LOC_Os01g651691/11POT family protein, expressed
LOC_Os01g651401/11POT family protein, expressed
LOC_Os01g651501/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9518.1.S1_x_at--985--8991Chr01:38129066..38129090 (25 bp)
TGAAGAGCTTGGTCAGCTTCGCCGT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--871--811Chr01:38129194..38129218 (25 bp)
ATGGTCACGGCGTGCCTCGCCATGG
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--788--7231Chr01:38129290..38129314 (25 bp)
GTCGCGGTGCCAATGAGCGTGTGGT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--815--8251Chr01:38129424..38129448 (25 bp)
GGCAGCGTGCATGAGCGTCGTCGGC
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--337--7654Chr01:38129496..38129520 (25 bp)
GGGAGAGAGCTGGTTCTCCGACAAT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--1085--6711Chr01:38129508..38129532 (25 bp)
GTTCTCCGACAATCTCAACCGTGCT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--1027--9711Chr01:38129522..38129546 (25 bp)
TCAACCGTGCTCACCTTGACTACTT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--252--5831Chr01:38129542..38129566 (25 bp)
TACTTCTACTGGCTTTTGGCCGGAA
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--78--8291Chr01:38129552..38129576 (25 bp)
GGCTTTTGGCCGGAATTAGTGCTTT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--2--8451Chr01:38129558..38129582 (25 bp)
TGGCCGGAATTAGTGCTTTAGATGT
LOC_Os01g65120
OsAffx.9518.1.S1_x_at--982--7311Chr01:38129570..38129594 (25 bp)
GTGCTTTAGATGTGCTGGTGTTCTT
LOC_Os01g65120
Target Sequence 
TGAAGAGCTTGGTCAGCTTCGCCGTCATGGTCACCATCCCGGCCTACGACCGCGCCCTGGTGCCGCTCGCGAGGCGCGTC
ACCAAGCACCCCTCCGGGATCACGACGCTGCGGCGCGTCGGCACGGGCATGGTCACGGCGTGCCTCGCCATGGCCGTCGC
GGCGCTGGTCGAGGCCGCGCGGCTCCGCGCCGCCAGGGACGCCGGCCTCCTGGACGAGCCGGGCGTCGCGGTGCCAATGA
GCGTGTGGTGGCTGGCGCCGCAGTTCGTCCTGCTCGGCGTCGCCACCACGTTCACCATGGTCGGCCTCGAGGAGTTCTTC
TACGACCAGGTGCCCGACGAGCTCCGCAGCGTCGGCGTGGCAGCGTGCATGAGCGTCGTCGGCGTGGGGAGCTACGCGAG
TGGCATGCTCGTGTCGGCGACGAGGAGTAGGGGAGAGAGCTGGTTCTCCGACAATCTCAACCGTGCTCACCTTGACTACT
TCTACTGGCTTTTGGCCGGAATTAGTGCTTTAGATGTGCTGGTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9518.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis