Browse Element(s) Details


Os.8796.2.S1_a_at

Description gb:AK065024.1
DB_XREF= gi:32975042
TID=Os.8796.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0039A07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G09, full insert sequence.
FL= gb:AK072211.1 gb:AK065024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6508011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8796.2.S1_a_at--619--8111Chr01:38104900..38104924 (25 bp)
GGACGACATCCCAAATCTTGACATG
LOC_Os01g65080
Os.8796.2.S1_a_at--772--4871Chr01:38104944..38104968 (25 bp)
GCTATTTCTCGCCATTGAGCTTTGA
LOC_Os01g65080
Os.8796.2.S1_a_at--994--51Chr01:38104957..38104981 (25 bp)
ATTGAGCTTTGATCCTTGCTTCGGT
LOC_Os01g65080
Os.8796.2.S1_a_at--900--10611Chr01:38104976..38105000 (25 bp)
TTCGGTGGGCTTGATGACTTCACTC
LOC_Os01g65080
Os.8796.2.S1_a_at--750--5691Chr01:38104991..38105015 (25 bp)
GACTTCACTCGACCTGGATTTGACA
LOC_Os01g65080
Os.8796.2.S1_a_at--902--10751Chr01:38105010..38105034 (25 bp)
TTGACATCTCTGAGAATCCCTTCTC
LOC_Os01g65080
Os.8796.2.S1_a_at--742--6431Chr01:38105049..38105073 (25 bp)
GATCATGCAGCTTCGGGCAGCAGAA
LOC_Os01g65080
Os.8796.2.S1_a_at--1125--2951Chr01:38105113..38105137 (25 bp)
AATGGCCTTGCCTACCTTTGTGTAC
LOC_Os01g65080
Os.8796.2.S1_a_at--2--10251Chr01:38105129..38105153 (25 bp)
TTTGTGTACCTTGTCTAGCCCTATT
LOC_Os01g65080
Os.8796.2.S1_a_at--433--4551Chr01:38105146..38105170 (25 bp)
GCCCTATTCTTCCTCTGTTGAAGGA
LOC_Os01g65080
Os.8796.2.S1_a_at--692--10331Chr01:38105176..38105200 (25 bp)
TTTAGGTCATTCCTTCTTCCTGAAG
LOC_Os01g65080
Target Sequence 
GGACGACATCCCAAATCTTGACATGAAGATGGCTGATGATCCACGCTATTTCTCGCCATTGAGCTTTGATCCTTGCTTCG
GTGGGCTTGATGACTTCACTCGACCTGGATTTGACATCTCTGAGAATCCCTTCTCCTTCTTGCCCTCAGGATCATGCAGC
TTCGGGCAGCAGAACGGAGACAGCTGATCGAGGCCAACGTTAACGATGACGGCAATGGCCTTGCCTACCTTTGTGTACCT
TGTCTAGCCCTATTCTTCCTCTGTTGAAGGAGCCATTTTAGGTCATTCCTTCTTCCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8796.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis